PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042309001
Common NameGSBRNA2T00042309001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 208aa    MW: 23776 Da    PI: 10.0446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042309001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-054971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  GSBRNA2T00042309001 49 YTCSFCRREFRSAQALGGHMNVH 71
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.64E-74676No hitNo description
Gene3DG3DSA:3.30.160.606.1E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3024976IPR007087Zinc finger, C2H2
PfamPF139121.3E-54972IPR007087Zinc finger, C2H2
SMARTSM003550.00614971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKRTHLASFS SRNKTQEKEE GDTNGNDRII MNHYKNYEAG LIPWPPKNYT CSFCRREFRS  60
AQALGGHMNV HRRDKAKLRQ TPTWLFDPHH HHTPVRNPNP NLNSSSSTTL AHHEPSLLNK  120
ISITTRFDIL DNATSYEGLM VEREKNNNNV RSRDLKKTAM DSCHAAKCEI SRGDLMNKKD  180
GVMGLELGMR LRNPKQVLDL ELRLGCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134471229superman protein
2l1o_A4e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|Ref.4}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042309001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553371e-166AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
GenBankAC1892201e-166AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635312.11e-154PREDICTED: transcriptional regulator SUPERMAN
RefseqXP_013635313.11e-154PREDICTED: transcriptional regulator SUPERMAN
SwissprotQ9SLB81e-109ZFP11_ARATH; Zinc finger protein 11
TrEMBLA0A078JDN81e-154A0A078JDN8_BRANA; BnaC04g52740D protein
TrEMBLA0A3P6BGD71e-154A0A3P6BGD7_BRAOL; Uncharacterized protein
STRINGBo4g015990.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.11e-105zinc finger protein 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]