PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042520001
Common NameGSBRNA2T00042520001, LOC106419474
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 212aa    MW: 23708.2 Da    PI: 4.6716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042520001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-16114164255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp +  k  r++lg+f +  +Aa+a++ a+ kl+g
  GSBRNA2T00042520001 114 HYRGVRRRP-WGKFAAEIRDPAK--KGSRIWLGTFESNVDAARAYDCAAFKLRG 164
                          7********.**********954..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-31113173IPR001471AP2/ERF domain
PROSITE profilePS5103224.395114172IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22114173IPR016177DNA-binding domain
SMARTSM003801.0E-35114178IPR001471AP2/ERF domain
CDDcd000182.48E-29114172No hitNo description
PfamPF008473.7E-11114164IPR001471AP2/ERF domain
PRINTSPR003673.9E-13115126IPR001471AP2/ERF domain
PRINTSPR003673.9E-13154174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAAFEESSDL DAIQEHLLED FLVADGFMGD FDFNASFVSG LWCIEPVMNQ VPKQEPDSPV  60
LDPDSFVKEF LQVEVESSTS TGVSEQNSSP HETDQSVSPR KEAKRLEEEE EPRHYRGVRR  120
RPWGKFAAEI RDPAKKGSRI WLGTFESNVD AARAYDCAAF KLRGRKAVLN FPLDAGKYEA  180
PVNSGRKRKR SDVQEELQRS QSNSSSSSSD L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28113185469ATERF1
3gcc_A1e-28113185469ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.231210.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042520001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3507100.0AY350710.1 Brassica oleracea clone BAC Bo37N21, partial sequence.
GenBankHQ6139480.0HQ613948.1 Brassica napus ethylene response factor 50 (ERF50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122325.21e-154PREDICTED: ethylene-responsive transcription factor ERF106
RefseqXP_013715722.11e-154ethylene-responsive transcription factor ERF106
SwissprotQ9LY051e-111EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A078JG721e-153A0A078JG72_BRANA; BnaA10g30200D protein
TrEMBLA0A397XQ611e-153A0A397XQ61_BRACM; Uncharacterized protein
TrEMBLM4CYF31e-153M4CYF3_BRARP; Uncharacterized protein
STRINGBra009250.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-104ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]