PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00042622001

Common Name

GSBRNA2T00042622001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 192aa MW: 21931.1 Da PI: 5.2549

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00042622001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.3	1.1e-09	12	60	4	51
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeyss 51 e+ +r + +R + ++K AeEL + Cd+ ++++ + ++gkl ++s GSBRNA2T00042622001 12 EERKRRATVCQRRMKELMKMAEELTIVCDMSACLVFYNrKNGKLVAWPS 60 5566676666777799*******************99735799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.264	1	52	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.4E-4	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.98E-15	2	85	No hit	No description
SuperFamily	SSF55455	3.14E-15	2	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-11	12	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGKPKVKLAW VEERKRRATV CQRRMKELMK MAEELTIVCD MSACLVFYNR KNGKLVAWPS 60 LEKAQSLIDC YNALPEAERN MMANDEESSF IKTITKEIEK KLGLSRKAIE ELKMDNLMLQ 120 IKNGSRMIAD LSQTEIEKLK SYASEKVAYY DRELRKQHPN TSGNEPFLED DDGEMKTYEG 180 ESSESDGADN A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00042622001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715331.1	1e-139	agamous-like MADS-box protein AGL80
TrEMBL	A0A078JH37	1e-138	A0A078JH37_BRANA; BnaA10g30590D protein
STRING	Bra009174.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8774	13	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	1e-32	AGAMOUS-like 96

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]