PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00042625001
Common NameGSBRNA2T00042625001, LOC106419122
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21992.7 Da    PI: 4.7018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00042625001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121059351
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE- CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeyss 51
                         ie+  +rq t  +R +g++KKAeEL +L +a +++  f   +gkl  ++s
  GSBRNA2T00042625001 10 IEDRKKRQATCQRRMKGLMKKAEELTILSGASACLTFFNRdDGKLVVWPS 59
                         9***********************************99852689988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-8159IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-5222IPR002100Transcription factor, MADS-box
CDDcd002669.26E-22482No hitNo description
PROSITE profilePS5006612.909448IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-19494IPR002100Transcription factor, MADS-box
PfamPF003194.3E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-52237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAPKLKFALI EDRKKRQATC QRRMKGLMKK AEELTILSGA SACLTFFNRD DGKLVVWPSQ  60
EKAQSLIDRF NALSETERNE NAYDPESYIE ANIKKMEKRL EHSRKAVEEL EMDHLMLQIQ  120
NGRMLADLSQ TEVEKLKSYA SKKITCLERE LRTPHPNTSV EPFLEDEGFL NDDEDMETSE  180
GESSESDGAD NA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00042625001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122908.11e-141PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_013715334.11e-141agamous-like MADS-box protein AGL80
TrEMBLA0A078JE451e-139A0A078JE45_BRANA; BnaA10g30620D protein
TrEMBLA0A3P6DNN31e-139A0A3P6DNN3_BRACM; Uncharacterized protein
TrEMBLM4CY791e-139M4CY79_BRARP; Uncharacterized protein
STRINGBra009176.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87741332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-44AGAMOUS-like 96
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]