PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00042935001

Common Name

GSBRNA2T00042935001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ARR-B

Protein Properties

Length: 506aa MW: 57208.2 Da PI: 6.4101

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00042935001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71.7	1.1e-22	251	308	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 k+r++Wt++L e+F++av+ LGG+ kA Pk +l++ m++kgLt+ hv SHLQkYRl GSBRNA2T00042935001 251 KTRVVWTNDLQEKFLKAVDILGGARKANPKPLLKMledMNIKGLTRRHVCSHLQKYRL 308 68**************************877665559****************8 PP
2	Response_reg	58.7	3.3e-20	36	141	1	106
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+v+ + + ++ +++++ k gy +v++ +d+e+al+ l +e+ ++l++ D mp+++G+++lk i ++ +lp++++++ + ++ + + GSBRNA2T00042935001 36 VLVVEPNFVTLRKMKNLMIKYGY-QVTVYADAEAALAFLrnCEHGINLVIWDFHMPRINGIQALKIICTKM-DLPVVIMSDDDRKTSVMQ 123 899******************.***********555555******************8865.8************* PP HHHTTESEEEESS--HHH CS Response_reg 89 alkaGakdflsKpfdpee 106 a Ga +++Kp+ +e GSBRNA2T00042935001 124 ATVHGACYYVMKPIRKEI 141 ***********87654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	2.56E-26	33	158	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.4E-26	34	157	No hit	No description
SMART	SM00448	1.6E-17	34	145	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	33.012	35	150	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.6E-17	36	142	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.53E-18	37	145	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-21	249	310	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-12	250	311	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-19	251	308	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MSEASRTDDG DRTLFKQRET SQISSFLNEF PASANVLVVE PNFVTLRKMK NLMIKYGYQV 60 TVYADAEAAL AFLRNCEHGI NLVIWDFHMP RINGIQALKI ICTKMDLPVV IMSDDDRKTS 120 VMQATVHGAC YYVMKPIRKE IIATIWQHIV RKRMMSKSGL IPPVQLDAVQ NHDGFKENKD 180 DSMPVDQGNS EQNINMIGEK AEKKPQIGEN LPIQSDSVQN NGSDQDNNDS WTKSPYNSEQ 240 NMDGEERKQP KTRVVWTNDL QEKFLKAVDI LGGARKANPK PLLKMLEDMN IKGLTRRHVC 300 SHLQKYRLSL EGKEITQQMQ EFGWSSACTT SPLLGLNNVH TATSSLINGG ASYPVQENQY 360 QNGYMEVNNN HAASSTLMNG RATYPVQDNQ YQNGYLGVNN NQVMTNTMPY DFDHDHYLQK 420 QKPEKASSID IPEDLGLAYT MPRLPYNLGH GNHLQHEQQH QLSHQWNNVM SNNEPELPSS 480 NGVTGVGGTY PSLPYDPNEF YNYNQ*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MSEASRTDDG DRTLFKQRET SQISSFLNEF PASANVLVVE PNFVTLRKMK NLMIKYGYQV  60
TVYADAEAAL AFLRNCEHGI NLVIWDFHMP RINGIQALKI ICTKMDLPVV IMSDDDRKTS  120
VMQATVHGAC YYVMKPIRKE IIATIWQHIV RKRMMSKSGL IPPVQLDAVQ NHDGFKENKD  180
DSMPVDQGNS EQNINMIGEK AEKKPQIGEN LPIQSDSVQN NGSDQDNNDS WTKSPYNSEQ  240
NMDGEERKQP KTRVVWTNDL QEKFLKAVDI LGGARKANPK PLLKMLEDMN IKGLTRRHVC  300
SHLQKYRLSL EGKEITQQMQ EFGWSSACTT SPLLGLNNVH TATSSLINGG ASYPVQENQY  360
QNGYMEVNNN HAASSTLMNG RATYPVQDNQ YQNGYLGVNN NQVMTNTMPY DFDHDHYLQK  420
QKPEKASSID IPEDLGLAYT MPRLPYNLGH GNHLQHEQQH QLSHQWNNVM SNNEPELPSS  480
NGVTGVGGTY PSLPYDPNEF YNYNQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00042935001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144989.1	0.0	PREDICTED: putative two-component response regulator ARR19
TrEMBL	A0A078GXM1	0.0	A0A078GXM1_BRANA; BnaA05g16250D protein
TrEMBL	A0A397ZGZ9	0.0	A0A397ZGZ9_BRACM; Uncharacterized protein
TrEMBL	M4ETZ3	0.0	M4ETZ3_BRARP; Uncharacterized protein
STRING	Bra032275.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13137	16	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49190.1	5e-62	response regulator 19

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]