PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00043306001

Common Name

GSBRNA2T00043306001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 250aa MW: 28998.7 Da PI: 7.0634

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00043306001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44	5e-14	135	194	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r+++NRe+A+rsR RK+ i +L++ v +L+ eN++Lk++l+ l+ + +++ +++ GSBRNA2T00043306001 135 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDMENRELKNRLQLLTYQLQRVNTDN 194 6999*********************************************99998877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-13	126	190	No hit	No description
SMART	SM00338	3.0E-15	132	196	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.806	134	197	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-11	135	188	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.63E-11	136	189	No hit	No description
CDD	cd14702	1.87E-17	137	184	No hit	No description
PROSITE pattern	PS00036	0	139	154	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MLSTVPAFSM SEPGLVNQFQ GFQTGFTPWE WDCSDLFSVN QLSLEPAVPS PCFAESDSGL 60 VKIKSGFDDI KPGSDENYTG FIKTKPGFDE AQSSHGVPDE PDSDDPKQWT AIVSLHSGEQ 120 NHNRNKLIQP EMTEEKKRKR MESNRESAKR SRMRKQSHIN NLRNQVNQLD MENRELKNRL 180 QLLTYQLQRV NTDNIQLVAE QDILRLRLSE MRRILMIRRQ QQWELNNRRM IMTEQNPSTI 240 MDHMIYISK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	KRSRMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00043306001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572841.1	0.0	basic leucine zipper 63-like
TrEMBL	A0A078GVQ0	0.0	A0A078GVQ0_BRANA; BnaA03g54260D protein
STRING	Bo7g118720.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7855	18	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37730.1	1e-107	basic leucine-zipper 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]