PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044041001
Common NameGSBRNA2T00044041001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 264aa    MW: 29805.3 Da    PI: 8.1167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08158205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  GSBRNA2T00044041001 158 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 205
                          8*************************8....366999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-9152209No hitNo description
SuperFamilySSF474591.96E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-6158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MANFENLSSE LQTIAMDIYS SMTQAADLNN NNNISSNLQF QTFPPFSTSL NSLFLHHRHP  60
QQLHDLPGKY PGSDNNLSAT STLYHSSHNN VDETKKRKAL LQPLSSSENS SVSDQLNINT  120
TETGCSRRWK RLKKKNQEEE KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDI  180
VPGCYKSMGM ATMLDEIINY VQSLQNQVEL LSMKLTAASS FYDFNSETDA VDSMQRAKAR  240
EAVEMGRQTR DGNPVLHLSA WSL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044041001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1521230.0AC152123.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B21F5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723298.20.0transcription factor BEE 1-like
SwissprotQ8GZ131e-122BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A078JHZ00.0A0A078JHZ0_BRANA; BnaC05g50040D protein
STRINGBo5g025360.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-110BR enhanced expression 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]