PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044226001
Common NameGSBRNA2T00044226001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 301aa    MW: 33043.2 Da    PI: 9.0253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044226001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09757348
                         SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                          W+ eE++ + +a++++  +      +W + a++++ +++l ++k+++q++l
  GSBRNA2T00044226001  7 TWSREEEKSFENAIAMHCVEeeitedQWMKMASMVP-TKSLQELKNHYQMLL 57
                         6****************999****************.************986 PP
2Myb_DNA-binding41.53.1e-13132176347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
  GSBRNA2T00044226001 132 PWTQEEHRLFLLGLEKFGKGDWRSISRNYVITRTPTQVASHAQKY 176
                          7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.185361IPR017884SANT domain
SMARTSM007171.6E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-4658IPR009057Homeodomain-like
PfamPF002496.1E-7757IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-7762IPR009057Homeodomain-like
CDDcd001671.33E-6757No hitNo description
PROSITE profilePS5129417.259125181IPR017930Myb domain
SuperFamilySSF466892.62E-17126182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17128179IPR006447Myb domain, plants
SMARTSM007176.6E-11129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10130175IPR009057Homeodomain-like
PfamPF002491.0E-11132176IPR001005SANT/Myb domain
CDDcd001672.03E-10132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESVAVTWSR EEEKSFENAI AMHCVEEEIT EDQWMKMASM VPTKSLQELK NHYQMLLEDV  60
KAIESGQVPL PRYQRTGEEA AATSPANRDC HSSGGGGSTE KKPNHGVSGI SSSNGGGRSS  120
SKLEQERKKG IPWTQEEHRL FLLGLEKFGK GDWRSISRNY VITRTPTQVA SHAQKYFIRL  180
NSMNRDRRRS SIHDITSVNN QAPAVTGQQQ QQQQVVKHRP AQPQPQPQHH TMAGLGMYGG  240
APVGQPIIAP PDHMGSAVGT PVMLPPPMGT HHHIGVAPYA VPSYPVPPLP QQHPAPSTMH  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-138771177RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.239100.0vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044226001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0869062e-99AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBankAY5195282e-99AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBankBT0248622e-99BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641722.10.0transcription factor MYBS1-like
RefseqXP_013676680.10.0transcription factor MYBS1-like
RefseqXP_013731110.10.0transcription factor MYBS1-like
SwissprotQ9FNN65e-73SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078JEL90.0A0A078JEL9_BRANA; BnaA08g29670D protein
TrEMBLA0A397YCH40.0A0A397YCH4_BRACM; Uncharacterized protein
STRINGBo00685s060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-127MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]