PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044371001
Common NameGSBRNA2T00044371001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 306aa    MW: 33927.1 Da    PI: 9.1038
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044371001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.4e-34592001128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+Ptd+e++  +L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  GSBRNA2T00044371001  59 LPAGVKFDPTDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKVHtds 146
                          799**********99.89******9996665442222223554445**********.666777899******************743345 PP

                  NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSBRNA2T00044371001 147 evdgETRWHKTGKTRPVFT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                          5555788************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3853219IPR003441NAC domain
PROSITE profilePS5100533.40659219IPR003441NAC domain
PfamPF023654.5E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTWCNDSSDV QTVETIIPSP TVAESPEASF QISCHKTCPS CGHKFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLGHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVSKDGT  120
VRHFFHRPSK AYTTGTRKRR KVHTDSEVDG ETRWHKTGKT RPVFTGGRVK GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKIFYQT QPRQCSGSLS AAATAKERPY  240
LHLHGHHLGG GGSRHLYHNN GNVKGNVGGG SAGASEYYNN IPAIMSFNQS GIQNHLVHGT  300
QPFIP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044371001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566580.0DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137790.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A078GTR80.0A0A078GTR8_BRANA; BnaA03g49310D protein
TrEMBLA0A3P6A3780.0A0A3P6A378_BRACM; Uncharacterized protein
STRINGBra024197.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.10.0NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]