PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044503001
Common NameGSBRNA2T00044503001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 173aa    MW: 19723.7 Da    PI: 9.5016
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044503001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54201461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtd e++ +yLk+kv + +++   +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdk
  GSBRNA2T00044503001  20 LPPGFRFHPTDAEIIIHYLKEKVFNVRFTS-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDK 108
                          79*************************999.78***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ kg lvg+kktLvfy+grapkgekt+Wvmheyrl
  GSBRNA2T00044503001 109 EIFRGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
                          ****9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5716150IPR003441NAC domain
PROSITE profilePS5100551.35720167IPR003441NAC domain
PfamPF023651.8E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MLEEGGVVVN QGGDQEMVDL PPGFRFHPTD AEIIIHYLKE KVFNVRFTSA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEYRLDGIY SYHNLPKTAS VCNSTIFTEL LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-481814615142NO APICAL MERISTEM PROTEIN
1ut4_B6e-481814615142NO APICAL MERISTEM PROTEIN
1ut7_A6e-481814615142NO APICAL MERISTEM PROTEIN
1ut7_B6e-481814615142NO APICAL MERISTEM PROTEIN
3swm_A7e-481814618145NAC domain-containing protein 19
3swm_B7e-481814618145NAC domain-containing protein 19
3swm_C7e-481814618145NAC domain-containing protein 19
3swm_D7e-481814618145NAC domain-containing protein 19
3swp_A7e-481814618145NAC domain-containing protein 19
3swp_B7e-481814618145NAC domain-containing protein 19
3swp_C7e-481814618145NAC domain-containing protein 19
3swp_D7e-481814618145NAC domain-containing protein 19
4dul_A6e-481814615142NAC domain-containing protein 19
4dul_B6e-481814615142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044503001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616230.0AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
GenBankAY0818340.0AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639829.11e-118PREDICTED: NAC domain-containing protein 100-like
RefseqXP_013742263.21e-118NAC domain-containing protein 79-like
SwissprotQ9SQQ61e-112NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A078GXM61e-127A0A078GXM6_BRANA; BnaC01g40260D protein
STRINGBo1g152230.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-115NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  5. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]