PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044558001
Common NameGSBRNA2T00044558001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 404aa    MW: 44894.1 Da    PI: 6.2679
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044558001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.43.2e-36101197297
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                          lfqrlw++eDei lL+G++d+ ++++g s   d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k  sgke+ f+++hdq++fe
  GSBRNA2T00044558001 101 LFQRLWTDEDEIELLRGFLDYvTTHRGGSNPPDTAPFYEMIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVLFKSPHDQSTFE 190
                          79*******************88889989999********************************************************** PP

               DUF573  91 lskkiWg 97 
                          +s+kiW+
  GSBRNA2T00044558001 191 ISRKIWN 197
                          ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-33102197IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MTSDHRDAVF SIDSPDHEGG GAGDGGESDT DDDVALPETN DDLNSPYNVT VALPSGSAVP  60
VSAIPADSSP KWRRATEIVH RRQQQPPPPP PAAAIDDSRR LFQRLWTDED EIELLRGFLD  120
YVTTHRGGSN PPDTAPFYEM IKSKLQLEFN KNQLVEKLRR LKKKYRNVMS KFGSGKEVLF  180
KSPHDQSTFE ISRKIWNRTG KIIGFEMDFE EANVNDNSPG SNPSAAVEIE SENGVEKKGS  240
RKRSRSRIGK IEEDNNVNVN ETVSASIGGL IEETVRSCVS PLIKEMMNGT TSMMMAGSLG  300
PVLTRPLGYG VEGAGGNKGV RDERWRKQLI LELEVYSRRL ELVQEEIRAT LHELKTMPSG  360
ACAVYHVDHR ERSSVGFRMC YDRNSKFNGG THSREPFTTR SPD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044558001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584451.10.0PREDICTED: mediator-associated protein 1-like
RefseqXP_013746428.10.0probable transcription factor At3g04930 isoform X3
RefseqXP_022567160.10.0probable transcription factor At3g04930 isoform X1
RefseqXP_022567161.10.0probable transcription factor At3g04930 isoform X2
SwissprotQ9CAV71e-156STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A078GZL90.0A0A078GZL9_BRANA; BnaC01g39850D protein
TrEMBLA0A0D3AFK60.0A0A0D3AFK6_BRAOL; Uncharacterized protein
STRINGBo1g151840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-129DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]