PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044566001
Common NameGSBRNA2T00044566001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 400aa    MW: 45996.2 Da    PI: 7.2467
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044566001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.48e-2880161286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li +rr m+  ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k+ykk k++++++   +s +++y++++e
  GSBRNA2T00044566001  80 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHHDRGN---VSAKMSYYKEIE 161
                          ********************************************************************95...77889****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-470141IPR009057Homeodomain-like
PROSITE profilePS500908.07272136IPR017877Myb-like domain
SMARTSM007170.009576138IPR001005SANT/Myb domain
CDDcd122037.16E-3178143No hitNo description
PfamPF138371.1E-2079162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MFVSDKPRPN DFYKDDNTNS SSAARNMIID GDLQPHNHNH NHHHHNQHHH NHLQPQQILL  60
GESSSEDHEV KAPKKRAETW VQDETRSLIM FRRGMDGLFN TSKSNKHLWE EISAKMREKG  120
FDRSPTMCTD KWRNLLKEYK KAKHHDRGNV SAKMSYYKEI EDILRERSKK VTQYSKSPNT  180
PPIAKVDSFM QFTDKGFDDP SISFGSVEAN GRPGLNLERS LDHDGHPLAI TTVDAVPANG  240
VPPWNWRETP GNAGGDAHGQ PFGGRVITVK FGDYTRRIGI DGTAEAIKET IRSAFRLRTR  300
RAFWLEDEDQ VVRCLDRDMP LGNYLLHVDG GVAIRVCHYD ESNQLPVHTE EKIFYTEEDY  360
RDFLARRGWT YLQVDGFRNI DNMDDLQAGA VYRGVRERM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-5374159186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044566001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747921.10.0trihelix transcription factor GT-1-like
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A078GX120.0A0A078GX12_BRANA; BnaC05g09890D protein
STRINGBo5g017510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]