PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044730001
Common NameGSBRNA2T00044730001, LOC106394643
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 247aa    MW: 27005.9 Da    PI: 5.0559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044730001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-1858108155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a+++++g
  GSBRNA2T00044730001  58 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALAIKG 108
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1258108IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2159117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-3159117IPR001471AP2/ERF domain
PROSITE profilePS5103222.62959116IPR001471AP2/ERF domain
SMARTSM003801.6E-3659122IPR001471AP2/ERF domain
CDDcd000188.67E-3460118No hitNo description
PRINTSPR003672.2E-106071IPR001471AP2/ERF domain
PRINTSPR003672.2E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTSSNRSSSP TSSSSDQSDV TTTTSTHLSE TSPRNNKRKR SKDSSSSSSS SSSKLKHPVY  60
RGVRMRSWGK WVSEIRQPRK KTRIWLGTFA TADMAARAHD VAALAIKGSS AVINFPELAS  120
ILPRPASSSP HDIQAAAAEA AAMVVDGKLS ESESAATEMK EAPPSPESSC AATESKKEER  180
LEEIVELPNI EEGSYDMSVK SRSDLDYSEP LDCWVYPPPA IDLYEEFLEF DFLELWSFPH  240
TELINP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17571161272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.97530.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044730001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690667.11e-178ethylene-responsive transcription factor ERF036
SwissprotQ9LU182e-99ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A078GXB61e-177A0A078GXB6_BRANA; BnaC05g37110D protein
STRINGBo5g126280.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.11e-70ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]