PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044843001
Common NameGSBRNA2T00044843001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 485aa    MW: 53662.4 Da    PI: 7.005
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044843001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.81.5e-34471951128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G++F+Ptd+el+ e+L++kv  k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  GSBRNA2T00044843001  47 LPAGVKFDPTDQELM-EHLEAKVLVKDIKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtec 134
                          799************.99******9995543233444334666646**********.555666799******************879999 PP

                  NAM  78 .........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSBRNA2T00044843001 135 dnnmqgsgsSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195
                          99998887766788************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3843214IPR003441NAC domain
PROSITE profilePS5100532.57847214IPR003441NAC domain
PfamPF023654.0E-1548195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSKSNHAGSV TGSDIIDAKI EQHQLCGSKK CPSCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
MEHLEAKVLV KDIKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNNMQG SGSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EKEGELVVSK IFYQTQPRQC NWSSTSSLNA IGGGGGEVNS  240
DSGNTSGGSC SSSREILNVN HPNQSDEVGG VMAVPAAATT VPPGLPSYAM DQLSFVPFMK  300
SFDEMARRET PQTGQATCED VMAEQHRFRH HHHASPSATP NHGAHDHHHP QHHHQQQQRH  360
HAFNISQPTH PISTIISPST SLHHASINIL DDNPYHVHRI LLPNENYQIQ QQHQEGEEEH  420
NDGKMGARSA SGLEELIMGC TSSTTHHDVK DGSSSMGNQQ EAEWLKYSTF WPAPGSSDNQ  480
DHHG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044843001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615741e-175AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBankCP0026871e-175CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137841.10.0PREDICTED: uncharacterized protein LOC103861883 isoform X2
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078GYJ30.0A0A078GYJ3_BRANA; BnaA03g49460D protein
STRINGBra024152.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.10.0NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]