PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00044905001
Common NameGSBRNA2T00044905001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 261aa    MW: 29943.2 Da    PI: 10.4744
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00044905001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161762147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed +l ++v+ +G++ W+ Iar+m+ gRt+k+c++rw++ 
  GSBRNA2T00044905001 17 RGHWKPSEDFKLQELVTVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 62
                         899*****************************.***********996 PP
2Myb_DNA-binding52.31.3e-1669111145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + ++++eE+e+l+ +++ +G++ W++Ia+ ++ gRt++ +k++w+
  GSBRNA2T00044905001  69 KSAFSEEEEEKLLAVHRTFGNK-WSLIAKLFP-GRTDNAVKNHWH 111
                          578*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9991263IPR017930Myb domain
SMARTSM007171.9E-121665IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-2817110IPR009057Homeodomain-like
PfamPF002492.2E-141762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241870IPR009057Homeodomain-like
CDDcd001675.38E-112061No hitNo description
PROSITE profilePS5129425.7164118IPR017930Myb domain
SMARTSM007172.7E-1468116IPR001005SANT/Myb domain
PfamPF002491.0E-1469111IPR001005SANT/Myb domain
CDDcd001675.61E-1171111No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2171118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMHQENKKKH LSKVCTRGHW KPSEDFKLQE LVTVFGPKKW NHIARKMQGR TGKSCRLRWF  60
NQLDPRIIKS AFSEEEEEKL LAVHRTFGNK WSLIAKLFPG RTDNAVKNHW HILMARKLRK  120
QSISYSKSRK RQTPSPDEIA PLNLLPSFNL FPGFVGGEST EFKNYSWKMP KEESANLRDQ  180
FLLEEYCSMR MSMQYLGHHH HQHGFSTLPA DSVELHTRYL SNSQPSSSSP PTSALSTSGA  240
ENTMTTKPPR FIDFLGVGAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-32811818128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.151660.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00044905001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728631.10.0transcriptional activator Myb-like
TrEMBLA0A078GYN30.0A0A078GYN3_BRANA; BnaC04g31750D protein
STRINGBra025652.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.25e-84myb domain protein 110
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]