PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045092001

Common Name

GSBRNA2T00045092001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 82aa MW: 9205.57 Da PI: 10.2437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045092001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.2	9.8e-12	14	71	2	59
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetr 59 fY++Y++++GF +r+ + ++s+r+g+i r+f C+keg+ + + k+ + r++r++tr GSBRNA2T00045092001 14 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEGRCVSVRGKSGSVRKPRQSTR 71 9*************************************99988888788888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-9	14	71	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MAVEFESEDA AKMFYDDYSR SLGFVMRVMS CRRSERDGRI LARRFGCNKE GRCVSVRGKS 60 GSVRKPRQST RGGLVRLCDS C*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11624	8e-94	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045092001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572523.1	1e-47	O-acyltransferase WSD1-like isoform X1
Refseq	XP_022572524.1	1e-47	O-acyltransferase WSD1-like isoform X2
TrEMBL	A0A078GY17	5e-50	A0A078GY17_BRANA; BnaA04g24970D protein
TrEMBL	M4F9G1	5e-50	M4F9G1_BRARP; Uncharacterized protein
STRING	Bra037724.1-P	8e-51	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-41	FAR1 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]