PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045093001

Common Name

GSBRNA2T00045093001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 255aa MW: 29585.9 Da PI: 9.6714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045093001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.2	1e-26	78	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+r+g+i r+f C+keg+ + + k+ + r++r++tr gCka+++vk +++gkw+vtk+++eHnH+l+ GSBRNA2T00045093001 78 FYDDYSRSLGFVMRVMSCRRSERDGRILARRFGCNKEGRCVSVRGKSGSVRKPRQSTREGCKAMVHVKYDRSGKWVVTKFVKEHNHPLV 166 9************************************99999999**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-24	78	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MYLKNTTTFS INTMSGLILS DRQNPVSKKI LSFHQFDCFP SLGFNFLDQF SFTVTIDSMA 60 VEPREGTEFE SEEAAKMFYD DYSRSLGFVM RVMSCRRSER DGRILARRFG CNKEGRCVSV 120 RGKSGSVRKP RQSTREGCKA MVHVKYDRSG KWVVTKFVKE HNHPLVVEPR QARQSLDEKD 180 KRIQELTIEL RNKKRLCAAY KEQLDAFAKI VEEYSNRMSK RVESVVENLK EFEEIEFELL 240 RSKQDAIYKP ALNV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11624	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045093001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572525.1	1e-142	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A078GYT7	0.0	A0A078GYT7_BRANA; BnaA04g24980D protein
TrEMBL	A0A3P6CZY1	0.0	A0A3P6CZY1_BRACM; Uncharacterized protein
STRING	Bra037723.1-P	1e-135	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-113	FAR1 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]