PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045108001

Common Name

GSBRNA2T00045108001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 799aa MW: 88353.6 Da PI: 6.3028

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045108001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.7e-28	496	546	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e ++sl +l+++Fs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ GSBRNA2T00045108001 496 ERNVSLRVLQQHFSGSLKDAARSIGVCPTTLKRICRQHGIMRWPSRKINKV 546 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.381	483	566	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-26	498	546	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.48E-22	686	781	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-22	695	776	No hit	No description
PROSITE profile	PS51745	19.962	697	779	IPR000270	PB1 domain
SMART	SM00666	5.5E-22	697	779	IPR000270	PB1 domain
Pfam	PF00564	3.3E-17	698	778	IPR000270	PB1 domain
CDD	cd06407	6.75E-33	698	778	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MEQHPFASRE NGFGYQEHMD GLTIGSGVWS FISDDMLNSS PTSELMNFNS FPTWCNVPFD 60 TDMLFSQYGQ EMSSRSHHHS FDIDELSGKR RSVLNCTIPR SLSHSLDEKM LKALSLFMQF 120 SGSGDGVLAQ VWTPVKTGDQ NMLSTCGRAY LLDPRLSQYR EVSRKFTFAS KPNQSSYPGL 180 PGRVFISGVR EWTPNVMYYK KDEYLRVKHA IDNEVRGSIA IPILEATGTS CCAVMELVTF 240 DEKLSFDVEM DSVCRALQAV DLRTSVVPRP QVTSEPNKSL AVYRSAGYLS SNQRDALAEI 300 QDVLRALCHA HKLPLALTWI PNSGVLCVEE TACYVNDMEM EGFVHACVDH PLREKEGIVG 360 KAFVSNQPSF SSDVKAYDIS EYPLVHHARK YGLNAAVAIK LRSTYTGEDD YILELFLPLS 420 LKGSLEQQLL LDSLEGTLQR VCRTLRTVSD VVGETNSTTS IFSDKSSDKD STGSQGTCEQ 480 DMSKARTAER TKGATERNVS LRVLQQHFSG SLKDAARSIG VCPTTLKRIC RQHGIMRWPS 540 RKINKVNRSL RKIQTVLDSV HGIEGGLRFD SATGEFVAVC SSNGNNAHVM AEDASCELLK 600 PESVNNTIKL EDDIITNGSF MEVNASDQPC ALKAEQSGFN GSSQEIASGN IIEPNRSMSD 660 SSHGSGAVML RSSSPSMDDR NQRRAHKSNS SESGSATLTV KATYREDTTR FKFDPSVGCL 720 QLYKEVGKRF RLQEGLFQLK YFDDEEEWVM LVTDSDLQEC LEMLVGMKKQ TVKFLVRDLP 780 AARIGSSAGS SGYLGAGL*

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MEQHPFASRE NGFGYQEHMD GLTIGSGVWS FISDDMLNSS PTSELMNFNS FPTWCNVPFD  60
TDMLFSQYGQ EMSSRSHHHS FDIDELSGKR RSVLNCTIPR SLSHSLDEKM LKALSLFMQF  120
SGSGDGVLAQ VWTPVKTGDQ NMLSTCGRAY LLDPRLSQYR EVSRKFTFAS KPNQSSYPGL  180
PGRVFISGVR EWTPNVMYYK KDEYLRVKHA IDNEVRGSIA IPILEATGTS CCAVMELVTF  240
DEKLSFDVEM DSVCRALQAV DLRTSVVPRP QVTSEPNKSL AVYRSAGYLS SNQRDALAEI  300
QDVLRALCHA HKLPLALTWI PNSGVLCVEE TACYVNDMEM EGFVHACVDH PLREKEGIVG  360
KAFVSNQPSF SSDVKAYDIS EYPLVHHARK YGLNAAVAIK LRSTYTGEDD YILELFLPLS  420
LKGSLEQQLL LDSLEGTLQR VCRTLRTVSD VVGETNSTTS IFSDKSSDKD STGSQGTCEQ  480
DMSKARTAER TKGATERNVS LRVLQQHFSG SLKDAARSIG VCPTTLKRIC RQHGIMRWPS  540
RKINKVNRSL RKIQTVLDSV HGIEGGLRFD SATGEFVAVC SSNGNNAHVM AEDASCELLK  600
PESVNNTIKL EDDIITNGSF MEVNASDQPC ALKAEQSGFN GSSQEIASGN IIEPNRSMSD  660
SSHGSGAVML RSSSPSMDDR NQRRAHKSNS SESGSATLTV KATYREDTTR FKFDPSVGCL  720
QLYKEVGKRF RLQEGLFQLK YFDDEEEWVM LVTDSDLQEC LEMLVGMKKQ TVKFLVRDLP  780
AARIGSSAGS SGYLGAGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045108001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013720216.1	0.0	protein NLP8-like isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A078GV58	0.0	A0A078GV58_BRANA; BnaA04g25110D protein
STRING	Bra037711.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]