PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045453001

Common Name

GSBRNA2T00045453001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 128aa MW: 14771 Da PI: 8.4721

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045453001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	52.2	1.7e-16	1	86	9	102
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 +++d+++++++sws++g+sf+ +d+++f ++vLpk+ ++ + FvR n+Y F+kv+ +e+ e++h++F +gk el +i+ GSBRNA2T00045453001 1 MVDDPSTDSIVSWSQDGKSFIFWDQDKFCSDVLPKFGLSTSPTFFVRLTNIYCFRKVEVSEH--------CEYAHDYFVRGKPELTVEIE 82 89*******************************9999***************9995........6***************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ + GSBRNA2T00045453001 83 RQFK 86 9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.6E-15	1	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.2E-21	1	84	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.3E-16	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-17	1	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MVDDPSTDSI VSWSQDGKSF IFWDQDKFCS DVLPKFGLST SPTFFVRLTN IYCFRKVEVS 60 EHCEYAHDYF VRGKPELTVE IERQFKERGA PIKLAIKPHE PAYKESKERI RAFMLAKKAA 120 RSLSLKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-13	1	84	36	129	Heat shock factor protein 1
5d5v_B	1e-13	1	84	36	129	Heat shock factor protein 1
5d5v_D	1e-13	1	84	36	129	Heat shock factor protein 1
5hdg_A	1e-13	1	84	17	110	Heat shock factor protein 1
5hdn_A	1e-13	1	84	17	110	Heat shock factor protein 1
5hdn_B	1e-13	1	84	17	110	Heat shock factor protein 1
5hdn_C	1e-13	1	84	17	110	Heat shock factor protein 1
5hdn_D	1e-13	1	84	17	110	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045453001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618084.1	2e-86	PREDICTED: heat stress transcription factor B-4b-like
TrEMBL	A0A078JC91	3e-89	A0A078JC91_BRANA; BnaUnng01050D protein
STRING	Bra029226.1-P	9e-86	(Brassica rapa)
STRING	Bo2g165560.1	9e-86	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM965	28	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	2e-18	heat shock factor 4

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]