PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045458001

Common Name

GSBRNA2T00045458001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 145aa MW: 16568.7 Da PI: 8.7662

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045458001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	50.2	6.8e-16	43	124	2	91
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHH.HTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLn.mYgFkkvkdeekkskskekiweFkhksFkkgk 90 F lye+++d+++++++sws++g+sf+ +d+++f ++vLp+y s F+ L+ +Y F+kv+++e+ e++h++F +gk GSBRNA2T00045458001 43 FADVLYEMVDDPSTDSIVSWSQDGKSFIFWDQDKFCNDVLPNYG-LSTSPTFIGRLHkIYSFRKVEESEH--------CEYAHDYFVRGK 123 77889**********************************975.56667788777637***9995........6*****9998 PP X CS HSF_DNA-bind 91 k 91 GSBRNA2T00045458001 124 P 124 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.6E-13	39	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.9E-20	40	125	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.1E-5	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.44E-16	43	124	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.5E-16	43	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-5	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MAGKINLREL SSSSSPPKAG RVKEYYRYPA LEAFNKGRVR RYFADVLYEM VDDPSTDSIV 60 SWSQDGKSFI FWDQDKFCND VLPNYGLSTS PTFIGRLHKI YSFRKVEESE HCEYAHDYFV 120 RGKPAVQGKG ITCHRHVQLH PVVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045458001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022565203.1	1e-85	heat stress transcription factor A-4a-like
TrEMBL	A0A078JHT0	1e-104	A0A078JHT0_BRANA; BnaUnng01080D protein
STRING	Bo2g165540.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13231	11	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18870.1	3e-17	HSF family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]