PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00045617001
Common NameGSBRNA2T00045617001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 108aa    MW: 12211.6 Da    PI: 5.8836
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00045617001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA241.3e-0715303752
            CBFB_NFYA 37 pylheSRhkhAlrRpR 52
                         pylheSRh hAl+R R
  GSBRNA2T00045617001 15 PYLHESRHLHALKRGR 30
                         8*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS511529.112139IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.1E-51531IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MLLPHNIPEN EPIFPYLHES RHLHALKRGR DALVGVSSYQ EASRIKISTI TFLQEPSEEC  60
FHILSDLTGN NNDMFQQNTQ FKFSGFPLNH YVSDSQFSCE TITPNSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00045617001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464075.11e-20PREDICTED: nuclear transcription factor Y subunit A-6-like
TrEMBLA0A078JCI64e-74A0A078JCI6_BRANA; BnaCnng46640D protein
TrEMBLA0A0D3CKE04e-74A0A0D3CKE0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F3H14e-74A0A3P6F3H1_BRAOL; Uncharacterized protein
STRINGBo5g131780.17e-75(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-20nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]