PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00045908001

Common Name

GSBRNA2T00045908001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 235aa MW: 26002.2 Da PI: 5.5151

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00045908001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.4e-10	6	56	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 + WT+ E l d+v+++G+g W+ I + k R+ ++k++w+++ GSBRNA2T00045908001 6 KMWTPKEVTALRDGVRKYGSGKWSGILSDSKygralKARSNVDLKDKWRNL 56 67***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.81	1	68	IPR017930	Myb domain
SuperFamily	SSF46689	2.34E-13	3	58	IPR009057	Homeodomain-like
SMART	SM00717	0.0059	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-13	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	5.4E-7	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	6.84E-16	6	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGGRKKMWTP KEVTALRDGV RKYGSGKWSG ILSDSKYGRA LKARSNVDLK DKWRNLGAGT 60 FGSRKKKVLA IVAVANDNDG EQEIVPASPV NDDDEGLFAS VDTFILEAIT SWKKLLRPNK 120 KWILHHVEKN NRYTISPTYA AAEAEQSSPQ LLLEGVVNHT KSQEDGEAFK INGMTEEEAS 180 SAAAIALEEA EFARAEAEEA AREADRAEEE AEAMQDYAKA VKEVWKNLMR SQTW*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00045908001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115670.1	1e-134	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115671.1	1e-134	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115672.1	1e-134	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115673.1	1e-134	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115674.1	1e-134	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_013691529.1	1e-134	telomere repeat-binding factor 3-like isoform X1
Swissprot	Q9M2X3	5e-34	TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBL	A0A078GYQ7	1e-169	A0A078GYQ7_BRANA; BnaAnng03960D protein
TrEMBL	A0A3P5YL62	1e-169	A0A3P5YL62_BRACM; Uncharacterized protein
TrEMBL	M4F4N5	1e-169	M4F4N5_BRARP; Uncharacterized protein
STRING	Bra036035.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21564	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	8e-36	telomere repeat binding factor 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]