PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00046232001

Common Name

GSBRNA2T00046232001, NF-YC13

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 130aa MW: 14623.9 Da PI: 10.565

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00046232001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.5	1.1e-16	5	89	14	97
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 ++ + e+P++r+kki+k+d+d+++i +ea l++ + elf+ l+ +s + a e+kr+t++ + av+r + + dfl+d p GSBRNA2T00046232001 5 EETTRPEFPITRVKKIMKVDKDINKINSEALHLVTYSTELFLRFLAEKSSVVAAEKKRKTVNLDHLRIAVKRHQpTSDFLLDSLP 89 5566789*************************************************************9976489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.8E-17	8	77	IPR009072	Histone-fold
Pfam	PF00808	3.6E-20	11	74	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.2E-20	12	89	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MAEEEETTRP EFPITRVKKI MKVDKDINKI NSEALHLVTY STELFLRFLA EKSSVVAAEK 60 KRKTVNLDHL RIAVKRHQPT SDFLLDSLPL PSAQPVRVTK TVSERNPPPV GTRRIDAFFS 120 KGKAKVDSP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.275	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00046232001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797140	0.0	KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013596508.1	4e-85	PREDICTED: nuclear transcription factor Y subunit C-8
Refseq	XP_013651716.1	4e-85	nuclear transcription factor Y subunit C-8-like
Refseq	XP_013651717.1	4e-85	nuclear transcription factor Y subunit C-8-like
TrEMBL	A0A078H1V6	2e-87	A0A078H1V6_BRANA; BnaC07g16980D protein
STRING	Bo7g065250.1	2e-84	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-61	nuclear factor Y, subunit C13

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]