PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046259001
Common NameGSBRNA2T00046259001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 313aa    MW: 35202.5 Da    PI: 7.8308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046259001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.53.9e-34732141128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  GSBRNA2T00046259001  73 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLPVGVSKDGQVRHFFHRPSKAYTTGTRKRRKVSt 159
                          799***********9.89*****999956644322..22222333336**********8888888889******************7333 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  GSBRNA2T00046259001 160 deeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 214
                          45444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3565233IPR003441NAC domain
PROSITE profilePS5100531.53473233IPR003441NAC domain
PfamPF023651.2E-1474214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSWCDGSDDL NLERASNIDH PSIQLKDQSQ SCVTSRPDSK IIVESPIMTC SSCGHKMHQQ  60
DDQVGSIKDL PSLPAGVKFD PSDKEILMHL EAKVSSDKRK LHPLIDEFIP TLEGENGICY  120
THPEKLPVGV SKDGQVRHFF HRPSKAYTTG TRKRRKVSTD EEGHETRWHK TGKTRPVLSQ  180
SGEAGFKKIL VLYTNYGRQK KPEKTNWVMH QYHLGHSEDE KDGEPVLSKV FYQTQPRQCG  240
GSTETKPKNL VNLNRFSYEN LQGGFSYEHG GKSEDTTQVI RELVVRDGDV SCSFLSFTCD  300
ASKGKDSFMK NQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046259001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731402.10.0NAC domain-containing protein 10-like
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A078GZ800.0A0A078GZ80_BRANA; BnaC05g21870D protein
STRINGBra032910.1-P0.0(Brassica rapa)
STRINGBo5g055990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]