PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00046269001

Common Name

GSBRNA2T00046269001, LOC106401172

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

VOZ

Protein Properties

Length: 484aa MW: 53940.6 Da PI: 5.5288

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00046269001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	438.4	9.2e-135	205	422	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+la+neg+pg++pv+rp+gi+lkdgllfaalsak+ gk+vgipecegaatakspw GSBRNA2T00046269001 205 PPPSAFLGPKCALWDCPRPAQGFDWFQDYCSSFHAALAFNEGPPGMNPVVRPGGIGLKDGLLFAALSAKAGGKDVGIPECEGAATAKSPW 294 89************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfdl++le+et+rewlffdkprrafesgnrkqrslpdy+grgwhesrkq+m efgglkrsyymdpqp+++fewhlyeyein++da+ GSBRNA2T00046269001 295 NAPELFDLTVLESETLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQIMSEFGGLKRSYYMDPQPLHHFEWHLYEYEINKCDAC 384 ************************************************************************************** PP VOZ 181 alyrlelkl.vdekksakgkvskdsladlqkklgrlta 217 alyrlelkl vd+kk++kgk+s+ds+adlqk++grlta GSBRNA2T00046269001 385 ALYRLELKLvVDGKKNSKGKLSTDSVADLQKQMGRLTA 422 ****7369**********************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MTGKRSKITC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR 60 EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTDQNLE 120 AGKAAVFQRG YNLVQEKSEH GFSLADDHGK DPCLVVGNNF DGTAHLDYNQ YDLQQEFEPN 180 FNGGFNDCPT YGPLHISAFI PTICPPPSAF LGPKCALWDC PRPAQGFDWF QDYCSSFHAA 240 LAFNEGPPGM NPVVRPGGIG LKDGLLFAAL SAKAGGKDVG IPECEGAATA KSPWNAPELF 300 DLTVLESETL REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQIMS EFGGLKRSYY 360 MDPQPLHHFE WHLYEYEINK CDACALYRLE LKLVVDGKKN SKGKLSTDSV ADLQKQMGRL 420 TAEFPQENVN NKRCIKGRPK VNTKVAATTT GNVQNTVVEQ GNEYGVGEEF NYLVGNLTDY 480 YLP*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MTGKRSKITC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRGVDVTL LEEQVNQMLR  60
EWKSELNEPS PASSLQQEQG GTLGSFSTDI CRLLQLCDEE DDATSKLAPP KPEPTDQNLE  120
AGKAAVFQRG YNLVQEKSEH GFSLADDHGK DPCLVVGNNF DGTAHLDYNQ YDLQQEFEPN  180
FNGGFNDCPT YGPLHISAFI PTICPPPSAF LGPKCALWDC PRPAQGFDWF QDYCSSFHAA  240
LAFNEGPPGM NPVVRPGGIG LKDGLLFAAL SAKAGGKDVG IPECEGAATA KSPWNAPELF  300
DLTVLESETL REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQIMS EFGGLKRSYY  360
MDPQPLHHFE WHLYEYEINK CDACALYRLE LKLVVDGKKN SKGKLSTDSV ADLQKQMGRL  420
TAEFPQENVN NKRCIKGRPK VNTKVAATTT GNVQNTVVEQ GNEYGVGEEF NYLVGNLTDY  480
YLP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.23152	0.0	root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00046269001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125256	0.0	AB125256.1 Arabidopsis thaliana AtVOZ1 mRNA for transcription factor AtVOZ1, complete cds.
GenBank	AK227014	0.0	AK227014.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-45-I22.
GenBank	AK317006	0.0	AK317006.2 Arabidopsis thaliana AT1G28520 mRNA, partial cds, clone: RAFL16-07-G16.
GenBank	BT020261	0.0	BT020261.1 Arabidopsis thaliana At1g28520 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013587025.1	0.0	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_013587026.1	0.0	PREDICTED: transcription factor VOZ1 isoform X1
Refseq	XP_013697081.1	0.0	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A078H000	0.0	A0A078H000_BRANA; BnaC05g21930D protein
TrEMBL	A0A0D3CEB4	0.0	A0A0D3CEB4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EHD2	0.0	A0A3P6EHD2_BRAOL; Uncharacterized protein
STRING	Bo5g057050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Link Out ? help Back to Top
Entrez Gene	106401172

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]