PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046328001
Common NameGSBRNA2T00046328001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 147aa    MW: 16422.2 Da    PI: 8.3848
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA42.91.6e-1310333558
            CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
                         ++pylheSRh hAl+RpRgsgGrF
  GSBRNA2T00046328001 10 QQPYLHESRHVHALKRPRGSGGRF 33
                         69*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115219.738136IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-101033IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLISVFFLLQ QPYLHESRHV HALKRPRGSG GRFLNTKKLL QESEQAAAKE QERDKSVQQA  60
MRQTCLDSKL ICYSTTKTVV AQPLLALTSH LFPKVLISSD TLNSCFRVSQ QLGLTELCLF  120
MVSPMTCMEV GTCTISLSIS ETLDLW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.133091e-133seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046328001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895071e-168AC189507.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E11, complete sequence.
GenBankAC1896071e-168AC189607.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH031P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078H0881e-102A0A078H088_BRANA; BnaC04g27090D protein
TrEMBLA0A0D3BYB11e-102A0A0D3BYB1_BRAOL; Uncharacterized protein
STRINGBo4g121700.11e-103(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.33e-18nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]