PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046333001
Common NameGSBRNA2T00046333001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 168aa    MW: 18928.9 Da    PI: 9.8421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046333001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++Cg++F +   L  H+r+H
  GSBRNA2T00046333001  85 HKCSICGQMFGTGQALGGHMRKH 107
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.52E-744107No hitNo description
PfamPF139128.2E-114469IPR007087Zinc finger, C2H2
SMARTSM003550.434567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.2E-1084109IPR007087Zinc finger, C2H2
SMARTSM003550.008185107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72385112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRDRSDYED FITHIDMVKT ITMLSHSCVV KQIESTGSKT KGNRFECKTC NRKFDSFQAL  60
GGHRASHKKP KLVSVEQEQA KHTVHKCSIC GQMFGTGQAL GGHMRKHRES MINEQSVISS  120
MVCSTSPVMN SSKRVMRLDL NLTPLENDLV YIFAKNLVPH IDLKFVN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046333001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936481e-31AB493648.1 Arabidopsis thaliana At3g53600 mRNA for hypothetical protein, partial cds, clone: RAAt3g53600.
GenBankAL1329661e-31AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankBT0300441e-31BT030044.1 Arabidopsis thaliana At3g53600 mRNA, complete cds.
GenBankCP0026861e-31CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477214.11e-101PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD41e-64ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078H0411e-121A0A078H041_BRANA; BnaC04g27120D protein
STRINGBo00576s170.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.15e-81C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]