PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00046376001

Common Name

GSBRNA2T00046376001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

S1Fa-like

Protein Properties

Length: 744aa MW: 80601.8 Da PI: 8.0036

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00046376001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	124.7	3.1e-39	676	743	3	70
S1FA 3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +a++ea+GlnPGlivllv+gg+l+vflv+n +lyv+aqknlPP+kkkPvskkklkreklkqGv+vPGe GSBRNA2T00046376001 676 KAAAEARGLNPGLIVLLVIGGPLVVFLVANIVLYVHAQKNLPPKKKKPVSKKKLKREKLKQGVSVPGE 743 7899***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	5.13E-54	18	231	IPR013320	Concanavalin A-like lectin/glucanase domain
Pfam	PF00139	1.7E-54	22	232	IPR001220	Legume lectin domain
Gene3D	G3DSA:2.60.120.200	1.0E-61	22	231	IPR013320	Concanavalin A-like lectin/glucanase domain
CDD	cd06899	2.04E-71	25	228	No hit	No description
SuperFamily	SSF56112	6.47E-84	305	632	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	2.4E-29	307	400	No hit	No description
SMART	SM00220	4.7E-42	323	598	IPR000719	Protein kinase domain
PROSITE profile	PS50011	39.637	323	607	IPR000719	Protein kinase domain
Pfam	PF00069	5.0E-54	323	596	IPR000719	Protein kinase domain
CDD	cd14066	8.14E-94	329	598	No hit	No description
PROSITE pattern	PS00107	0	329	352	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:1.10.510.10	7.0E-47	402	600	No hit	No description
PROSITE pattern	PS00108	0	443	455	IPR008271	Serine/threonine-protein kinase, active site
Pfam	PF04689	1.8E-34	679	743	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006468	Biological Process	protein phosphorylation
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0030246	Molecular Function	carbohydrate binding

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence Send to blast
MSFLPSLFSV SILLCFFCSL NEATTDNGIV SLTRDLSVPN SGAGKVLYAN PIRFRQPGTH 60 SPASFSTFFS FSITNINPSS IGGGLAFVIT PDGNTVGAAG GSLGLAGPSV SKFVAVEYDT 120 LMDVDFKDIN SNHVGFDVNG VVSSVSGDLG TVDIDLKSGN TVNSWIEYDG LSRVFNVSVS 180 YSNLKPKSPV LSFPLDLDRY VNDFMFVGFS GSTQGSTESH SIEWWSFRSS FGSGPGSGSG 240 PSPPTANLPS SSAVPISSQS KTPPTCRNHL CKENRGAIAG VVTAGAFFLA LFAGGLHDSF 300 ASEIIKAPKE FSYKELKAAT KSFNESRSIG HGAFGVVYRG VLPETGDVVA VKRCSHSSQD 360 KKNEFLSELS IIGSLRHRNL VRLQGWCHER GEILLVYDLM PNGSLDKALF ESRFPLPWDH 420 RKKILLGVAS ALAYLHRECE NQVIHRDVKS SNIMLDENFN AKLGDFGLAR QIEHDKSPEA 480 TVAAGTMGYL APEYLLTGRA TEKTDVFSYG AVVLEVVTGR RPIEKDLNAQ RQNVGANPNL 540 VEWVWGLYKE GKVTAAADSR LEGKFDEGEM WRVMVVGLAC SHPDPEARPT MRSVVQMLIG 600 EADVPVVPKS RPTMSFSTSH LLLSLQDTLS DCNTLALNSS RSSSWSVPEH NVMIRGDDDH 660 MRFRIVFMDR EDFARKAAAE ARGLNPGLIV LLVIGGPLVV FLVANIVLYV HAQKNLPPKK 720 KKPVSKKKLK REKLKQGVSV PGE*

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence Send to blast

MSFLPSLFSV SILLCFFCSL NEATTDNGIV SLTRDLSVPN SGAGKVLYAN PIRFRQPGTH  60
SPASFSTFFS FSITNINPSS IGGGLAFVIT PDGNTVGAAG GSLGLAGPSV SKFVAVEYDT  120
LMDVDFKDIN SNHVGFDVNG VVSSVSGDLG TVDIDLKSGN TVNSWIEYDG LSRVFNVSVS  180
YSNLKPKSPV LSFPLDLDRY VNDFMFVGFS GSTQGSTESH SIEWWSFRSS FGSGPGSGSG  240
PSPPTANLPS SSAVPISSQS KTPPTCRNHL CKENRGAIAG VVTAGAFFLA LFAGGLHDSF  300
ASEIIKAPKE FSYKELKAAT KSFNESRSIG HGAFGVVYRG VLPETGDVVA VKRCSHSSQD  360
KKNEFLSELS IIGSLRHRNL VRLQGWCHER GEILLVYDLM PNGSLDKALF ESRFPLPWDH  420
RKKILLGVAS ALAYLHRECE NQVIHRDVKS SNIMLDENFN AKLGDFGLAR QIEHDKSPEA  480
TVAAGTMGYL APEYLLTGRA TEKTDVFSYG AVVLEVVTGR RPIEKDLNAQ RQNVGANPNL  540
VEWVWGLYKE GKVTAAADSR LEGKFDEGEM WRVMVVGLAC SHPDPEARPT MRSVVQMLIG  600
EADVPVVPKS RPTMSFSTSH LLLSLQDTLS DCNTLALNSS RSSSWSVPEH NVMIRGDDDH  660
MRFRIVFMDR EDFARKAAAE ARGLNPGLIV LLVIGGPLVV FLVANIVLYV HAQKNLPPKK  720
KKPVSKKKLK REKLKQGVSV PGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6cth_A	3e-91	309	617	3	306	Concanavalin A-like lectin protein kinase family protein
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00046376001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613776.1	0.0	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
Refseq	XP_013613778.1	0.0	PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
Refseq	XP_013666974.1	0.0	L-type lectin-domain containing receptor kinase VIII.1-like
Refseq	XP_022556687.1	0.0	L-type lectin-domain containing receptor kinase VIII.1-like
Swissprot	Q9LFH9	0.0	LRK81_ARATH; L-type lectin-domain containing receptor kinase VIII.1
TrEMBL	A0A078H068	0.0	A0A078H068_BRANA; BnaC04g27370D protein
STRING	Bo00703s150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3769	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	4e-17	WRKY family protein

Publications ? help Back to Top
Nühse TS,Stensballe A,Jensen ON,Peck SC Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell, 2004. 16(9): p. 2394-405 [PMID:15308754] Bouwmeester K,Govers F Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles. J. Exp. Bot., 2009. 60(15): p. 4383-96 [PMID:19773388] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Eggermont L,Verstraeten B,Van Damme EJM Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana. Plant Genome, 2018. [PMID:28724081]