PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046471001
Common NameGSBRNA2T00046471001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 171aa    MW: 18797.7 Da    PI: 10.0985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046471001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000563961123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k Fs+   L  H  +H
  GSBRNA2T00046471001 39 FRCKTCTKEFSSFQALGGHRASH 61
                         89**********99999998887 PP
2zf-C2H214.97.9e-0591113123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  GSBRNA2T00046471001  91 HTCPICGLEFPMGQALGGHMRKH 113
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-737113No hitNo description
PfamPF139122.4E-113863IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2863961IPR007087Zinc finger, C2H2
SMARTSM003550.273961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139121.5E-1091114IPR007087Zinc finger, C2H2
SMARTSM003550.03491113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82491118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVVRSENLDQ TVEDTEATCL MLLSKVGECG RERGETRVFR CKTCTKEFSS FQALGGHRAS  60
HKKPVNNSSD EQSSSLSSGS VTKKTKKPLS HTCPICGLEF PMGQALGGHM RKHRNEKERG  120
ALVTRSFLPE AKFTTLKKSS SGKRVACFGM GLDPMERVIN LKLELGRTIY *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046471001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936395e-31AB493639.1 Arabidopsis thaliana At3g46070 gene for hypothetical protein, partial cds, clone: RAAt3g46070.
GenBankAL3557755e-31AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026865e-31CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ4467395e-31DQ446739.1 Arabidopsis thaliana clone pENTR221-At3g46070 zinc finger family protein (At3g46070) mRNA, complete cds.
GenBankDQ6531335e-31DQ653133.1 Arabidopsis thaliana clone 0000012225_0000008871 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150251.11e-120PREDICTED: zinc finger protein ZAT8-like
RefseqXP_013646942.11e-120zinc finger protein ZAT8-like
SwissprotQ9LX853e-70ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A078H0H11e-121A0A078H0H1_BRANA; BnaA06g19890D protein
STRINGBra019477.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-69C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]