PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046472001
Common NameGSBRNA2T00046472001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 170aa    MW: 18804.5 Da    PI: 8.9213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046472001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006989111123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F     L  H+r+H
  GSBRNA2T00046472001  89 HRCSICGLEFEMGQALGGHMRKH 111
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.52E-637111No hitNo description
PfamPF139125.1E-63863IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2863966IPR007087Zinc finger, C2H2
SMARTSM003551.83961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139121.2E-1088112IPR007087Zinc finger, C2H2
SMARTSM003550.1289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.47389116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVSRSESFDR TVEDTTTNCL MLLSRVGECG GGDVEGRVFR CKTCMKEFSS FHALGVHRVS  60
HKKPVSNSNG EEQSGIFIKK KTKKTGWHHR CSICGLEFEM GQALGGHMRK HWNKEDSGGA  120
LITRSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRKMY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046472001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150252.11e-113PREDICTED: zinc finger protein ZAT8-like
RefseqXP_013646943.11e-113zinc finger protein ZAT8-like
SwissprotQ9LX856e-56ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A078GWR01e-121A0A078GWR0_BRANA; BnaA06g19880D protein
STRINGBra019476.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.15e-55C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]