PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00046841001
Common NameGSBRNA2T00046841001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 288aa    MW: 32964.1 Da    PI: 7.5995
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00046841001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.8e-181866250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +++ +s + +++  R+ +i+KKA+EL +L d+e++vi ++++g+l++++
  GSBRNA2T00046841001 18 SSSTYSLAPTSLNSRLLTIFKKAQELTTLSDIEACVIHYGPDGELRTWP 66
                         6788999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-1230101IPR002100Transcription factor, MADS-box
PfamPF003192.3E-83265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRSPRPSSCS ESSSSSSSSS TYSLAPTSLN SRLLTIFKKA QELTTLSDIE ACVIHYGPDG  60
ELRTWPENRD IVRDLALRYI QLDEAKRRKK NVNLYEFLNK NKDKKKMANN FKKKAKKNVE  120
ELKYPISDHY SPDEINQLIH SLELSYSTLQ ERRRFLAAKK HNESLNPSQF TPYHKSLAVQ  180
KSGLHYQLMP YVGGYDQSMC MGNNFQDPCL SNIQDYSVIP LELQESVSNY ELNQLMPHEL  240
LWLGSKHDLY SGFMVDNPSF PQDFNPDMSS SYVDENRLLQ ASTLPSL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00046841001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479659.11e-137PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FLL01e-57AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLA0A078JD850.0A0A078JD85_BRANA; BnaCnng47860D protein
TrEMBLA0A0D3BZX90.0A0A0D3BZX9_BRAOL; Uncharacterized protein
STRINGBo4g139260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-54AGAMOUS-like 75
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]