PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047120001
Common NameGSBRNA2T00047120001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 315aa    MW: 34767.6 Da    PI: 6.179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047120001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10166214355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00047120001 166 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 214
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-11161218No hitNo description
PROSITE profilePS5088815.485163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-17164231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7166214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGGENNEDWD PVVSGGGFSS SHYTSMVMDN PGMSCFPHYQ TGSDYPDMPP SLLPFGDCVG  60
GGPVLGSDKK GESVGRLIRA GESHQVSDDD VLGASPSRKR RQLEAESSQR NKKAVEEFLE  120
EPQRGSDQSQ KKHKNDQSKE KESSQSEEAP EKNYIHMRAR RGQATNSHSL AERVRREKIS  180
ERMRLLQELV PGCNKITGKA VMLDEIINYV QSLQQQVEFL SMKLATVNPE LNIDIDRILA  240
KDIMQSRDVR TTPTLGLNPF SGFQGTIPNV PTTTNSQYNP LHQASNKSEL QSLYQMGFVS  300
NPSTMSSFSP NNGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101SRKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.183571e-166seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047120001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankAK2293090.0AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144473.10.0PREDICTED: transcription factor bHLH74-like isoform X2
SwissprotQ6NKN91e-172BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A078H2J00.0A0A078H2J0_BRANA; BnaA08g25980D protein
STRINGBo8g059100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-164bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]