PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00047285001

Common Name

GSBRNA2T00047285001, LOC106399331

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 212aa MW: 23501.2 Da PI: 4.1388

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00047285001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	49.3	1.2e-15	10	103	6	94
NF-YB 6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +lP+a v r++k+ l + + i k+a e + fi ++++ a+d+c+ +r+t++++d++ a+ ++Gfed+ eplk+ l+ + GSBRNA2T00047285001 10 DELPLAIVRRVVKNKLSEcspeyDVSIHKEAILAFSEGAWIFIHYLSATANDNCKDSRRQTMKAEDVFKAIEDMGFEDFSEPLKASLEDF 99 689*********99652222356899*********************************************************999 PP NF-YB 91 rele 94 ++ + GSBRNA2T00047285001 100 KKKN 103 8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.9E-24	10	100	IPR009072	Histone-fold
Pfam	PF00808	2.1E-6	11	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.47E-21	12	129	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTESEKVLED ELPLAIVRRV VKNKLSECSP EYDVSIHKEA ILAFSEGAWI FIHYLSATAN 60 DNCKDSRRQT MKAEDVFKAI EDMGFEDFSE PLKASLEDFK KKNAGKKAGG GEGAASSSKP 120 KETGKRKQEG ASMQKGVRKC KSDEGDKKND ENDNTEENVN DEDDGTEENG NGEEDDEEGN 180 EENMEEEFGS GEHDEKESGD EKEADNKEED E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00047285001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695258.1	1e-149	DNA polymerase epsilon subunit 3
TrEMBL	A0A078H2V0	1e-147	A0A078H2V0_BRANA; BnaC03g47130D protein
STRING	Bo3g040500.1	1e-135	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-55	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Entrez Gene	106399331

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]