PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047447001
Common NameGSBRNA2T00047447001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 279aa    MW: 31635.6 Da    PI: 8.9212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047447001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19109158356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          ++GVr+++ +g+WvAeIr p++   r+r +lg+f ta+eAa a+++a++k++ge
  GSBRNA2T00047447001 109 HRGVRQRH-WGKWVAEIRLPKT---RTRLWLGTFETADEAALAYDQAARKIRGE 158
                          8******9.**********965...4**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.03E-33107167No hitNo description
SuperFamilySSF541711.9E-21108166IPR016177DNA-binding domain
PROSITE profilePS5103222.26108165IPR001471AP2/ERF domain
SMARTSM003802.5E-38108171IPR001471AP2/ERF domain
PfamPF008475.5E-13109158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31109166IPR001471AP2/ERF domain
PRINTSPR003675.4E-10109120IPR001471AP2/ERF domain
PRINTSPR003675.4E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEVSLNMNGY TEEFMQALES FMKVTSSSSS SSSSSPSSSK QEQLTLNNQT GPIGLNQLTP  60
IQILQIQREL HLRQNQTRRR GGSAHNLHLL NAKPTLMKKT DVTRPVKLHR GVRQRHWGKW  120
VAEIRLPKTR TRLWLGTFET ADEAALAYDQ AARKIRGENA RLNFPNNKEY KETLSPTVNA  180
KIASIFNSSD LPMHELKKPA KTEEGFFGFQ YTGPKPDQER EFPDIFGYES GSSHESNITL  240
LNFSSEWIKE NESFCIGLQK YPSLEIDWEA IDKLSESV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19107165160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047447001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130491.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-119ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078H1H00.0A0A078H1H0_BRANA; BnaA02g34570D protein
TrEMBLA0A3P6AHW10.0A0A3P6AHW1_BRACM; Uncharacterized protein
STRINGBra031880.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-108ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]