PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047591001
Common NameGSBRNA2T00047591001, LOC106428676
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 320aa    MW: 36683.4 Da    PI: 9.6789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047591001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.24.3e-46411682128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eel+++yLk+ v gk++++ evi  ++iy ++PwdLp+  + +e+ewyfF++r++k+  g r++r+t++gyWkatg+d++
  GSBRNA2T00047591001  41 LPGFRFHPTEEELLDFYLKNIVYGKRCKV-EVIGFLNIYGHDPWDLPRLSTIGEREWYFFVPRERKHGDGGRPSRITEKGYWKATGSDRK 129
                          59***************************.99***************7777799************************************ PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s+   ++ +glkktLvfy+grap g+ktdWvm+e+r+
  GSBRNA2T00047591001 130 IISSsePKRMIGLKKTLVFYTGRAPGGTKTDWVMNEFRM 168
                          **98666677***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100551.71740186IPR003441NAC domain
SuperFamilySSF1019412.35E-5440186IPR003441NAC domain
PfamPF023651.2E-2342168IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALHLSFDLV CSLKTVPHHT THWVQVLYIG TVRDMSKEIQ LPGFRFHPTE EELLDFYLKN  60
IVYGKRCKVE VIGFLNIYGH DPWDLPRLST IGEREWYFFV PRERKHGDGG RPSRITEKGY  120
WKATGSDRKI ISSSEPKRMI GLKKTLVFYT GRAPGGTKTD WVMNEFRMPD NLTLPKSVVL  180
CKIYRKATSL KVLEQRAEME AKMNQTRPSS PLSSSGTNCL AGKEEDVMMT SFPFPQAEAM  240
KQPNHILMFQ EHNENAKNKE KQREAERKQP SSSLKLPSGV LPIPELQLPK QGFELGQDQF  300
LSISPWLQNL TPIINLLYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-45331867168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047591001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382700.0KF738270.1 Brassica napus NAC transcription factor 36 (NAC36.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724878.10.0NAC transcription factor 29-like isoform X1
SwissprotQ10S655e-86NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A078GY020.0A0A078GY02_BRANA; BnaA07g03200D protein
TrEMBLA0A3P6B9D60.0A0A3P6B9D6_BRACM; Uncharacterized protein
STRINGBra002018.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-159NAC domain containing protein 36
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]