PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047896001
Common NameGSBRNA2T00047896001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 211aa    MW: 23014.2 Da    PI: 3.9089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047896001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-1216104191
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldg 86 
                          ffkv +p d++    l +p +f +   ++k+ +  +++++  g+ W++kl   k+ g     + + +GWk+ vk+ +Lk g+f+ F++dg
  GSBRNA2T00047896001  16 FFKVYLPDDSGD--DLDIPISFNSF--LPKPLPEYIIVRSIYGNIWKLKL--MKCCGDdvdkVSMVNGWKRIVKDEDLKGGEFLAFEFDG 99 
                          788886666554..59******743..56779999***************..55555455679999*********************998 PP

                          SSEE. CS
                   B3  87 rsefe 91 
                          ++ f+
  GSBRNA2T00047896001 100 SRLFN 104
                          66663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-159110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-199113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-1414108No hitNo description
PROSITE profilePS5086311.30714111IPR003340B3 DNA binding domain
SMARTSM010191.3E-1216111IPR003340B3 DNA binding domain
PfamPF023624.5E-1016104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MNKGTGDSSD DCLPKFFKVY LPDDSGDDLD IPISFNSFLP KPLPEYIIVR SIYGNIWKLK  60
LMKCCGDDVD KVSMVNGWKR IVKDEDLKGG EFLAFEFDGS RLFNFCIYGQ ATCKRLGSSV  120
KTKEITDESE GEDGKSCVDV IVIDDDSTDD DDDVSSGQGS GMEDQSTKDI IVIDEDTSDG  180
DDETRSGVET EIIEKGSSEV STKSDSGEGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1361131104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047896001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018510757.11e-124PREDICTED: B3 domain-containing protein At5g60142-like isoform X1
SwissprotQ9LST31e-59Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A078H2E71e-145A0A078H2E7_BRANA; BnaA10g12970D protein
TrEMBLA0A397XKE71e-145A0A397XKE7_BRACM; Uncharacterized protein
STRINGBo9g141120.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-61B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]