PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047897001
Common NameGSBRNA2T00047897001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 311aa    MW: 34900.5 Da    PI: 4.1276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047897001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-1531121194
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          ffkv +p+d++    l +p +f  ++  + +   +k +t+++ +g +W++kl+  ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg+
  GSBRNA2T00047897001  31 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLRKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGS 114
                          889997766665..59******8.66543.3..45569999***********666888888*************************9997 PP

                          SEE..EE CS
                   B3  88 sefelvv 94 
                          + f+++v
  GSBRNA2T00047897001 115 RLFNFCV 121
                          7775554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1625124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1825126IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-1529122No hitNo description
PROSITE profilePS5086312.12529125IPR003340B3 DNA binding domain
PfamPF023628.6E-1331121IPR003340B3 DNA binding domain
SMARTSM010192.6E-1331125IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-11206303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-7206307IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MCYFQNIRSA QRETTMKKVT GDSSGDRLPK FFKVYLPNDS GDDLEIPVSF NSCLPSSVPK  60
SVTVTNINGH VWKLKLRKLS GDPEKFSMVD GWKRIVKDED LKGGEFLAFE FDGSRLFNFC  120
VYGQATCKKL GKSAEVDDDD DDDDDVIVID DDDDDDDDDE DDDGDDDEAA DDEDDDEDVD  180
VDVEADDVDD GMETDDGDEH RQLLDDPDSP SFTVILNPKK KSQLLIPSHI MKDYNLHFTE  240
RITIVDPLVP KFGTLERKIK LQDNGCLFVK GFGSVFRRNN VKTTDTIICE VKKNGNDVAH  300
ILKVHIVRGL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-133012710104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.61730.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047897001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681380.11e-164B3 domain-containing protein At5g60130-like isoform X1
RefseqXP_013710322.11e-164B3 domain-containing protein At5g60130-like isoform X1
SwissprotQ9LVG11e-95Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A078GYP30.0A0A078GYP3_BRANA; BnaA10g12960D protein
STRINGBo9g141110.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.13e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]