PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047898001
Common NameGSBRNA2T00047898001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 453aa    MW: 49305.8 Da    PI: 7.9829
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047898001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17135184155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSBRNA2T00047898001 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 184
                          78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8135184IPR001471AP2/ERF domain
CDDcd000182.22E-11135191No hitNo description
SuperFamilySSF541711.57E-15135193IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-17136192IPR001471AP2/ERF domain
SMARTSM003801.1E-30136198IPR001471AP2/ERF domain
PROSITE profilePS5103217.332136192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLDLNLDLDS KEVSGAVLNQ MDESVTSNSS LVNAEASSCI DGEEEMCSAP AVKFQFEILK  60
GGGREGEEGR SEVMTKEFFP VEKGGSFVDL SGQSSRSSVD ISFQRGNQGG DAARVTQPPA  120
QPVKKSRRGP RSKSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAV  180
KFRGLEADIN FVISDYEEDL KQMANLSKEE VVQVLRRQSS GFSRNNSRYQ GANLPKIGGW  240
GGAQMEQLNG NMAYDKATAT KWNGREAASL IEPHASRIIP ETANVKLDLN LGISLSLGDS  300
PKQNLNNIVC GRNSKMENHM AASTCDTPFN FLKRGSDHLI NRHVHPSALF SPMERTPREG  360
FMPGSPQSFP VRTWQAQDQP SGGTATTATA STLLSNAASS GFSHSATRPP SSSTASLHPS  420
QPFLNLNIPG LYVIHPSQHQ HHHDINRSQP PP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047898001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0019160.0BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685425.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X1
RefseqXP_013685426.10.0AP2-like ethylene-responsive transcription factor TOE2 isoform X1
RefseqXP_013707897.10.0AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A078H1D40.0A0A078H1D4_BRANA; BnaA10g12950D protein
STRINGBra002510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.10.0target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]