PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047942001
Common NameGSBRNA2T00047942001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 487aa    MW: 54867.3 Da    PI: 5.8592
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-1323911798
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         ++  +f+++h ++      l + d+s + W+vkl  ++++   + ++GW+eF+ka+  ++gD +vF++dg++ f  +v+v  
  GSBRNA2T00047942001 23 TVDDEFLRKHTKV------LLISDSSDKIWKVKL--DGSR---LAGGGWEEFAKAHSFRDGDLLVFRHDGDEIF--HVSVSP 91
                         5566777777644......78889**********..8888...889**********************999999..777654 PP
2B367.42e-21159251598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W+++l+ + +sg +++++GW +F++angL +gD++ Fkl++ +++++v+
  GSBRNA2T00047942001 159 RVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLRLSKNSTSGVFYIRQGWVNFCSANGLSQGDICKFKLSE-NGERPVL 247
                          578999999*********7666444556669***************77777777*************************987.6777999 PP

                          EEE- CS
                   B3  95 kvfr 98 
                          +++ 
  GSBRNA2T00047942001 248 RLCP 251
                          9986 PP
3B369.16.2e-22279376199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l++ +
  GSBRNA2T00047942001 279 FLTVKLTPNRLQTGQLYISSVFVNESGIKK--SGEITLMNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLELIW-E 365
                          77888999***************9999885..458***************9966655556****************************.7 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          + ++v+k+++k
  GSBRNA2T00047942001 366 DDNPVFKFCSK 376
                          7789****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.731193IPR003340B3 DNA binding domain
SMARTSM010191.8E-121093IPR003340B3 DNA binding domain
PfamPF023623.2E-82789IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-122791IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-112889IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-102889No hitNo description
SMARTSM010192.9E-24155253IPR003340B3 DNA binding domain
PROSITE profilePS5086314.819155252IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-19158253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-18160252IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-19160251IPR003340B3 DNA binding domain
CDDcd100171.89E-19165251No hitNo description
Gene3DG3DSA:2.40.330.102.6E-20274376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20278378IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-28279377IPR003340B3 DNA binding domain
PfamPF023625.0E-23279376IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14279379IPR003340B3 DNA binding domain
CDDcd100176.50E-16279375No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MTIPPTFSLF HHRFITGDKP VLTVDDEFLR KHTKVLLISD SSDKIWKVKL DGSRLAGGGW  60
EEFAKAHSFR DGDLLVFRHD GDEIFHVSVS PRSDSCDISH HASPSLVDTD DVETDDDYSE  120
SDDGEDEYDD DDDGGEDDAG NIMVNKNTKA GFSCILRARV TPYSLIKDRL DLSKDFTVVS  180
FNEHNKPCEI DLVNEKGRKW TLRLSKNSTS GVFYIRQGWV NFCSANGLSQ GDICKFKLSE  240
NGERPVLRLC PSSNSHEEEE ECLEADARKG KKKNTPSQFL TVKLTPNRLQ TGQLYISSVF  300
VNESGIKKSG EITLMNQDGR KWPSYLQMTG QCGSEWFYLR HGWREMCKAN GVKVNDSFVL  360
ELIWEDDNPV FKFCSKAENK GNGNGRLRKK RACETSIVET ERRKRGRPRV SNTNSSNLQR  420
TRQESCSVSD QVASVKLSIL DTLNTVRQFR ADIEAREKNL EASSLEVDAL AERILGISQI  480
LNNNPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388404KKRACETSIVETERRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00602PBMTransfer from AT4G31610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047942001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108916.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X2
RefseqXP_013720407.10.0B3 domain-containing protein REM1-like isoform X2
RefseqXP_022545721.10.0B3 domain-containing protein REM1-like isoform X2
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A078JDF20.0A0A078JDF2_BRANA; BnaA08g30700D protein
STRINGBra010228.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-173B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]