PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00047986001
Common NameGSBRNA2T00047986001, LOC106417961, LOC106449689
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 301aa    MW: 34515.2 Da    PI: 7.8608
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00047986001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-101461147
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd +l+ +++  G+g +W + ++++g++R++k+c  +++ +
  GSBRNA2T00047986001 14 KGPWSPEEDAKLKSYIETSGTGgNWIALPHKIGLKRCGKSCMRWLNYL 61
                         79***************************************9777654 PP
2Myb_DNA-binding346.9e-1169110346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++ E+ ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  GSBRNA2T00047986001  69 GFSEAEENIICNLYLTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 110
                          699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.03E-2211108IPR009057Homeodomain-like
SMARTSM007172.0E-61363IPR001005SANT/Myb domain
PfamPF002491.7E-91461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-191568IPR009057Homeodomain-like
CDDcd001671.36E-51661No hitNo description
PROSITE profilePS5129419.54462116IPR017930Myb domain
SMARTSM007171.0E-966114IPR001005SANT/Myb domain
PfamPF002491.1E-968110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2269117IPR009057Homeodomain-like
CDDcd001672.45E-670112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRSPCCDKA NVKKGPWSPE EDAKLKSYIE TSGTGGNWIA LPHKIGLKRC GKSCMRWLNY  60
LRPNIKHGGF SEAEENIICN LYLTIGSRWS IIAAQLPGRT DNDIKNYWNT RLKKKLIIKQ  120
RKELQEACIE QQEMMVMLKR QQQQIQPTFM MRQDQTMFTW PLQKLPFHHH NDGQVPTLVM  180
NSFGDQEDIK PEIIKNMVKI EDQEPERTNA FDHLYFSQLL LDPNSNYLGS GEGFSMNSIL  240
STNTNSPLRN TSISHQRFRN FHDEAVDLFL GEAGTSADQS TIRWEDISSL VYSDSKQVVN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00047986001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195971e-165AY519597.1 Arabidopsis thaliana MYB transcription factor (At3g49690) mRNA, complete cds.
GenBankBT0292241e-165BT029224.1 Arabidopsis thaliana At3g49690 mRNA, complete cds.
GenBankY142091e-165Y14209.1 A.thaliana mRNA for AtMYB84 R2R3-MYB transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714118.10.0transcription factor RAX3-like
RefseqXP_013746869.10.0transcription factor RAX3-like
SwissprotQ9M2Y91e-161RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A078JGP40.0A0A078JGP4_BRANA; BnaC08g48600D protein
TrEMBLA0A3P6GJ210.0A0A3P6GJ21_BRAOL; Uncharacterized protein
STRINGBo8g078940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-151myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]