PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048416001
Common NameGSBRNA2T00048416001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 203aa    MW: 23073 Da    PI: 7.8533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048416001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-1120871587
                         -EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3 15 rlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                          l++p  f+++h +gk +++ t tl++    ++W+v    + ++    lt+GWkeF++a++L+ gD+v+  l++ 
  GSBRNA2T00048416001 20 YLTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIHGLSQA 87
                         499*********7555.56668888874777*****99..7777....********************9877655 PP
2B351.42e-16107186283
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          fk++++ ++ +++ l lp   +  + ++ke+ k+ +l + +g+ W+v ++++ ++g y+++ GW++F+ +n+   gD++vF 
  GSBRNA2T00048416001 107 FKAEVTDSNVREDKLDLPVGATGCNALNKEC-KKAKLVNIEGKAWNVSMRFNESGGFYYIK-GWRKFCAENKCHIGDSFVFN 186
                          78999999999999*******9888999877.6*****************99999999998.*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-13284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-12381IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.3896102IPR003340B3 DNA binding domain
CDDcd100176.28E-11781No hitNo description
SMARTSM010192.8E-4993IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-13105185IPR015300DNA-binding pseudobarrel domain
CDDcd100175.85E-13106185No hitNo description
PROSITE profilePS5086311.702106202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-14106186IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.8E-8107201IPR003340B3 DNA binding domain
PfamPF023622.2E-14107186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQPQEPHFF QPLLPGFQTY LTIPIVFFSK HIQGKTNGNT WTLTSDAMDQ TWQVIQEERR  60
LTRGWKEFAE AHDLRIGDIV IHGLSQAHDH QNNRTGARFS YSWDYCFKAE VTDSNVREDK  120
LDLPVGATGC NALNKECKKA KLVNIEGKAW NVSMRFNESG GFYYIKGWRK FCAENKCHIG  180
DSFVFNECLK SAGDIASSSR VN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048416001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895991e-104AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102011.11e-138PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009102349.11e-138PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009110111.11e-138PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009110645.11e-138PREDICTED: B3 domain-containing protein REM7-like isoform X2
RefseqXP_009131313.11e-138PREDICTED: B3 domain-containing protein REM7-like isoform X2
TrEMBLA0A078FCD51e-152A0A078FCD5_BRANA; BnaA05g17050D protein
STRINGBra036483.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16565313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-44B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]