PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048564001
Common NameGSBRNA2T00048564001, LOC106451410, WRKY21-1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 335aa    MW: 37763.8 Da    PI: 10.1303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048564001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30268326360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  GSBRNA2T00048564001 268 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPVMLIVTYEAEHSHPK 326
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16222264IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-32254326IPR003657WRKY domain
PROSITE profilePS5081129.712261327IPR003657WRKY domain
SuperFamilySSF1182904.18E-26264326IPR003657WRKY domain
SMARTSM007741.7E-35266326IPR003657WRKY domain
PfamPF031061.2E-25268325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEIEGANRA AVESSHRVLN LLCTPHQQDQ EYNNVSLLSE TREAVLRFKR VSTLLSTTSV  60
GHARFRRAKE PQTHLSQSIF LDPVHQRTEP PPSQKVLRSG FHELSTDSLT LGTRSFSLNS  120
DAKAKAPLLQ LNQSIHQNMF PEHQQLHERL EAHRHQMQQQ QKQQGEIMLR KCNGGISLSF  180
DNSSCTQTMS STRSFVSSLS IDGSVANVEG NNSFHLVGVQ SSQHSKRKCL IKCGSSSRCH  240
CSKKRKHRVR RSIRVPAISN KVADIPPDDY SWRKYGQKPI KGSPYPRGYY KCSSMRGCPA  300
RKHVERCLED PVMLIVTYEA EHSHPKLPSQ AMTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20254329276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225245KRKCLIKCGSSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048564001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123940.0EU912394.1 Brassica napus WRKY21-1 transcription factor (WRKY21-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303133.10.0probable WRKY transcription factor 21
SwissprotO043361e-162WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A3P5ZD760.0A0A3P5ZD76_BRACM; Uncharacterized protein
TrEMBLC4N0V90.0C4N0V9_BRANA; BnaA05g11870D protein
STRINGBra018303.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-145WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Yang B,Jiang Y,Rahman MH,Deyholos MK,Kav NN
    Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments.
    BMC Plant Biol., 2009. 9: p. 68
    [PMID:19493335]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]