PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00048609001

Common Name

GSBRNA2T00048609001, LOC106451373

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 610aa MW: 67703.3 Da PI: 6.1809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00048609001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	446	483	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq GSBRNA2T00048609001 446 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 483 67799************55......5566667777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.1E-29	6	153	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	2.60E-4	427	484	No hit	No description
PROSITE profile	PS50888	11.28	433	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-4	445	501	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-5	446	490	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence Send to blast
MGSTSQEILR SFCSNTEWKY AVFWKLNHPS RMILTLEDAY YDNHGHNNSP KNMHGAHDPL 60 GLALAKMAYH VYSLGEGIVG HVAVSGEHQW VFPEYYDNWY SASEFHNVWE SQISAAIKTI 120 LVVPVGPCGV VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEENLVQC NMNNSFYLPK 180 LPSECSHVEA FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL 240 ITDQSYPGLD STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV 300 KSEHGSATRP TDDNMSHSQL TFDSAPENLL DAVVANVCHS EGNARDDIFS SKSVQSFLTS 360 MEMAEPSGQN KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ 420 TSLEMPKKNK RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML 480 FLQNVTKHAD KLSKSANAKM QQKKTGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM 540 LCEECSHFLE ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI 600 FQPKANGKP*

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence Send to blast

MGSTSQEILR SFCSNTEWKY AVFWKLNHPS RMILTLEDAY YDNHGHNNSP KNMHGAHDPL  60
GLALAKMAYH VYSLGEGIVG HVAVSGEHQW VFPEYYDNWY SASEFHNVWE SQISAAIKTI  120
LVVPVGPCGV VQLGSLLKVD EDVTLVNHIK HMFLALKDPL PDHEENLVQC NMNNSFYLPK  180
LPSECSHVEA FPNCSGEVGK AMDVEESSFL TQYPNLHPYL KNHVLNNTSS STLAIDTERL  240
ITDQSYPGLD STFHTLSTDN EKSSRFDALI SSGYNFPGSE LLEALGSGFK QTSRGLEELV  300
KSEHGSATRP TDDNMSHSQL TFDSAPENLL DAVVANVCHS EGNARDDIFS SKSVQSFLTS  360
MEMAEPSGQN KHIVSNPNDR AMNQPLVEVD TQQNPSDICG AFSSIGFSST CPSSSSDHFQ  420
TSLEMPKKNK RRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML  480
FLQNVTKHAD KLSKSANAKM QQKKTGGQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM  540
LCEECSHFLE ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI  600
FQPKANGKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	425	431	PKKNKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00048609001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013748754.1	0.0	transcription factor bHLH155
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A078FCX8	0.0	A0A078FCX8_BRANA; BnaA05g11570D protein
STRING	Bra018273.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Entrez Gene	106451373

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]