PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048620001
Common NameGSBRNA2T00048620001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 223aa    MW: 24630 Da    PI: 4.7771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048620001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1879129255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +g
  GSBRNA2T00048620001  79 SYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDEAEEAALAYDQAAFATKG 129
                          69*******.**********44465..**********************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-2878138No hitNo description
Gene3DG3DSA:3.30.730.103.4E-2979138IPR001471AP2/ERF domain
PfamPF008476.0E-1279127IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2179139IPR016177DNA-binding domain
PROSITE profilePS5103222.03679137IPR001471AP2/ERF domain
SMARTSM003804.1E-3579143IPR001471AP2/ERF domain
PRINTSPR003672.5E-108091IPR001471AP2/ERF domain
PRINTSPR003672.5E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSSSPSSWSS SQESFFWNEG SLLDHSSDHP SFFCPNYNYS DDFFSFESPE PMIKEETQNG  60
DVSNSEEEEK IGTIEEGKSY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF DEAEEAALAY  120
DQAAFATKGA LAVLNFPVEV VRESLKKMEN VNLQDGGSPI MALKRKHSLR NRPRGKKRSS  180
NSSSCSSNSS SYSSSSSTSC GTLVVFEDLG AEYLEQLLMS SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2778140163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2776140266ATERF1
3gcc_A1e-2776140266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048620001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0123890.0JX012389.1 Brassica napus isolate T0061 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144241.11e-132PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-114ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078FFB21e-161A0A078FFB2_BRANA; BnaA05g11530D protein
STRINGBra018271.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-91ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]