PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048622001
Common NameGSBRNA2T00048622001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 348aa    MW: 39160 Da    PI: 7.0143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048622001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13159202755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR ++N++fe L+ l+P++     +K + a+iL+  ++YIk+Lq
  GSBRNA2T00048622001 159 TTERERRCHLNERFEALKLLIPSP-----TKADRASILQDGIDYIKELQ 202
                          67**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.29E-13150206No hitNo description
SuperFamilySSF474592.88E-15151221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.678152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10159202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-14159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEFSVFLSS ETQNLISNDN NNNHMIHQMI HGSNWDNSGL FMNTSVPNTT TTPTPDLLSL  60
LHLPRCSVPL PSSNVSDILS GSCFTYDPLF HLNLPPQPPL IPSANYDHSG FFLDTNTTQR  120
DQPSAGDENN NAQFDGGIIE FSKKIRRKGR GKQKIKPFTT ERERRCHLNE RFEALKLLIP  180
SPTKADRASI LQDGIDYIKE LQRRVSELKY LVERKKCGGR HNNNNNNNNS DDCINEDTND  240
DENIVKKLES DVLDQCPSNN SLRCSWLQRK SKKKKINCLL VVSKVLDQLH LDLHHVAGGQ  300
IGEHYSFLLN TKINEGSTIY ASAIANKVIE VVDQHHLAAL PINNSCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274QRKSKKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048622001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013751310.10.0transcription factor bHLH91-like
SwissprotQ8GX461e-173BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A078F8J30.0A0A078F8J3_BRANA; BnaA05g11510D protein
TrEMBLM4DP290.0M4DP29_BRARP; Uncharacterized protein
STRINGBra018269.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]