PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048962001
Common NameGSBRNA2T00048962001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 262aa    MW: 28286.4 Da    PI: 6.5918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048962001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.5e-16193229135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg+++  Tp++Rrgp+g++tLCnaCGl++ ++g+
  GSBRNA2T00048962001 193 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWVSRGT 229
                          ********************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-115994IPR010399Tify domain
PROSITE profilePS5132014.7075994IPR010399Tify domain
PfamPF062004.0E-126193IPR010399Tify domain
PROSITE profilePS5101711.747125167IPR010402CCT domain
PfamPF062039.9E-15125166IPR010402CCT domain
PROSITE profilePS5011410.567187243IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-16187240IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-12189238No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14191233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-15192241No hitNo description
PROSITE patternPS003440193220IPR000679Zinc finger, GATA-type
PfamPF003201.6E-13193229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFPQLEINPY HIGSTLGEDH VSASAARIPY IDEIANHPDS IYAASGLIPD GSQLLDSPAP  60
EGANQLTVSY RGQVYVFDSV GPEKVDAVLS LLGGSTAAPQ GMEIAQQNHH MPVVEHQSRC  120
SHPQRAQSLD RFRKKRSARC FANQVRYGVR QEVALRMPRN KGQFSSATTA DGAYNSGTDQ  180
DNAHDDGRPE LSCTHCGVSS TCTPMMRRGP SGPRTLCNAC GLFWVSRGTL RDLPKKTEDN  240
QVAMIEPGEL GSDANANNSN Y*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048962001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895481e-137AC189548.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005A08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737991.10.0GATA transcription factor 25-like
SwissprotQ9LRH61e-128GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078FG570.0A0A078FG57_BRANA; BnaA03g46720D protein
STRINGBra019227.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-131GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]