PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00048980001
Common NameGSBRNA2T00048980001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 232aa    MW: 25312.4 Da    PI: 7.2157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00048980001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015111133123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+ksF +   L  H  +H
  GSBRNA2T00048980001 111 YQCQTCDKSFHSFQALGGHRASH 133
                          9*********9988888887776 PP
2zf-C2H211.90.00069147169123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+  Fs+   L  H+r+H
  GSBRNA2T00048980001 147 HECSICKAEFSSGQALGGHMRRH 169
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-8110169No hitNo description
PfamPF139124.9E-12110135IPR007087Zinc finger, C2H2
SMARTSM003550.049111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4144171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-12146171IPR007087Zinc finger, C2H2
SMARTSM003550.031147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307147171IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTSVHEETRL VLLVKGKRTK RQRSASPHMN AEAVSGVCSE EPSLEAREEG AGEVEFQGAT  60
EEDQDMANCL MLLSQGHKAN GSGDHSSTHK IDFLCKKKPV ASLGLGLEGV YQCQTCDKSF  120
HSFQALGGHR ASHKKPKLGE NKPEKTHECS ICKAEFSSGQ ALGGHMRRHR GLIVNANATS  180
SHHQESIRPK NFLELDLNLP APEDESKFVF ASKDQIILFT TASNSLIDCH H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00048980001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325221e-119AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721467.11e-164zinc finger protein ZAT5-like
TrEMBLA0A078FDI21e-170A0A078FDI2_BRANA; BnaA03g46860D protein
STRINGBra009525.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-120C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]