PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049021001

Common Name

GSBRNA2T00049021001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 366aa MW: 40482.6 Da PI: 5.7402

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049021001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	99.2	3.7e-31	143	243	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdq 86 k+fqrl+se+Dei++LqG++df++++g +ps+++daf+++vk i+f++sk q+v+K++r KkKf + vk+ k++++++ +k+ +q GSBRNA2T00049021001 143 KMFQRLFSETDEIAMLQGFLDFTSTKG-DPSENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNslkrGKTEDQITYAKDLEQ 231 58***********************.9*********************************9999887778999******* PP DUF573 87 kifelskkiWgs 98 +fels+kiWgs GSBRNA2T00049021001 232 RTFELSRKIWGS 243 ********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.6E-25	145	242	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MAPKDKIANP PVASSSEEEE EEEESGSSVE ESNSSDDEAG DVQSKLTQKP VAPPPPAKKP 60 ESDSEEESES DSDSEPATKT KPLNAVVTKP IPPESSTAKR SLKQADNEPK KKAKTSTTTE 120 QAKKKPSGAD EEVKKISGEE AKKMFQRLFS ETDEIAMLQG FLDFTSTKGD PSENMDAFCD 180 YVKTLIDFNA SKAQIVTKLQ RCKKKFVNIV KNSLKRGKTE DQITYAKDLE QRTFELSRKI 240 WGSDGVLPAK PRKKSKEVEL VSTPKKKTEV ETQKKVSVVE NHHLSESREM ALFFKAENGS 300 VLGLDESTVS GVWDMVEDGP KKREMEEKLK KLKAKQMELC LQRTALVDYT AKMIFKNNAS 360 SSSSC*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MAPKDKIANP PVASSSEEEE EEEESGSSVE ESNSSDDEAG DVQSKLTQKP VAPPPPAKKP  60
ESDSEEESES DSDSEPATKT KPLNAVVTKP IPPESSTAKR SLKQADNEPK KKAKTSTTTE  120
QAKKKPSGAD EEVKKISGEE AKKMFQRLFS ETDEIAMLQG FLDFTSTKGD PSENMDAFCD  180
YVKTLIDFNA SKAQIVTKLQ RCKKKFVNIV KNSLKRGKTE DQITYAKDLE QRTFELSRKI  240
WGSDGVLPAK PRKKSKEVEL VSTPKKKTEV ETQKKVSVVE NHHLSESREM ALFFKAENGS  300
VLGLDESTVS GVWDMVEDGP KKREMEEKLK KLKAKQMELC LQRTALVDYT AKMIFKNNAS  360
SSSSC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	114	PKKKAKT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13659	0.0	flower\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269\|PubMed:25877331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049021001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241036	0.0	AC241036.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137503.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like
Swissprot	Q9SB42	1e-105	STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBL	A0A078FCM1	0.0	A0A078FCM1_BRANA; BnaA03g47200D protein
STRING	Bra019183.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9272	17	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	7e-90	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]