PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049170001

Common Name

GSBRNA2T00049170001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 557aa MW: 61667 Da PI: 5.5073

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049170001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	463	511	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v+++G g W+ I + Rt+ ++k++w+++l GSBRNA2T00049170001 463 AWTLSEVTQLVEGVAKYGAGKWSEIKKLSFsshSYRTPVDLKDKWRNLL 511 7************************999999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.015	456	515	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-13	458	517	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-10	460	513	IPR001005	SANT/Myb domain
CDD	cd11660	1.10E-20	462	512	No hit	No description
SuperFamily	SSF46689	1.87E-16	462	521	IPR009057	Homeodomain-like
Pfam	PF00249	2.5E-7	463	511	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MRTVVGTVED CIDMFEGSAQ TRIIPLSPTN LIENPVTYKL VRVAGDGRLV PATDEEIVEV 60 NETGYAYSIR CLSESCPRVS FSVVPTRRNF SSSGLLQSEY VEPYTQEVNT QPEDERLAMI 120 HSLHMLSAPP DANIQLCNET DMFDEDHVHH EPLLQQPIPF SSNVQHGCNV DQSNTVEPTA 180 PPADAQRPDF SLVRGEICLN NLPIKALQET FKATFGRATT VTDKTWLKRR ITMGLTNSCN 240 VPTTNLTVKD KKLVENQDKA NDAPSSTDHA DGHSNASGHS LTEDFSSEER AAKRVRKPTR 300 RYIEELSEND EKQPVVTSKD EKLSEKSEVR SISVSLGKRV TVTRVVSLAG SEIEVPYVSL 360 VRRSCPRENI MALMECHSSC LEAKASSGES NMLHNEVLKS ASGPDQKESA TSSSNNEEDV 420 LTEVDEDMET ENIDSSGNSS DDNNNIGLPT MQGGGLRRKH HRAWTLSEVT QLVEGVAKYG 480 AGKWSEIKKL SFSSHSYRTP VDLKDKWRNL LRTNFAQSPS NIMGSLKKHG SMHIPMQILL 540 QVRELAEKQA LVPPNH*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MRTVVGTVED CIDMFEGSAQ TRIIPLSPTN LIENPVTYKL VRVAGDGRLV PATDEEIVEV  60
NETGYAYSIR CLSESCPRVS FSVVPTRRNF SSSGLLQSEY VEPYTQEVNT QPEDERLAMI  120
HSLHMLSAPP DANIQLCNET DMFDEDHVHH EPLLQQPIPF SSNVQHGCNV DQSNTVEPTA  180
PPADAQRPDF SLVRGEICLN NLPIKALQET FKATFGRATT VTDKTWLKRR ITMGLTNSCN  240
VPTTNLTVKD KKLVENQDKA NDAPSSTDHA DGHSNASGHS LTEDFSSEER AAKRVRKPTR  300
RYIEELSEND EKQPVVTSKD EKLSEKSEVR SISVSLGKRV TVTRVVSLAG SEIEVPYVSL  360
VRRSCPRENI MALMECHSSC LEAKASSGES NMLHNEVLKS ASGPDQKESA TSSSNNEEDV  420
LTEVDEDMET ENIDSSGNSS DDNNNIGLPT MQGGGLRRKH HRAWTLSEVT QLVEGVAKYG  480
AGKWSEIKKL SFSSHSYRTP VDLKDKWRNL LRTNFAQSPS NIMGSLKKHG SMHIPMQILL  540
QVRELAEKQA LVPPNH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.15221	7e-80	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049170001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013649025.1	0.0	uncharacterized protein LOC106353775 isoform X1
Refseq	XP_022551845.1	0.0	uncharacterized protein LOC111202918 isoform X1
TrEMBL	A0A078FDU0	0.0	A0A078FDU0_BRANA; BnaC06g24140D protein
STRING	Bra003870.1-P	0.0	(Brassica rapa)
STRING	Bo6g091360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4364	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	0.0	TRF-like 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]