PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00049282001

Common Name

GSBRNA2T00049282001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 255aa MW: 27894.7 Da PI: 8.9619

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00049282001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H GSBRNA2T00049282001 161 HECSICKAEFSSGQALGGHMRRH 183 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.0E-9	109	183	No hit	No description
Pfam	PF13912	1.6E-11	109	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.061	110	132	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.575	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.6E-4	158	185	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-12	160	185	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	161	183	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	161	188	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MTSVHEETRL VLLIKGKRTK RQRSVSPHMN AEAMSSVCKE ERSLEAREGV GEIEFRGATD 60 EDQDMANCLM LLSQGHKSNT SGDPLLTQKI GFLSNKKPVA SLGLGLNGVY QCKTCDKSFH 120 SFQALGGHRT SHKKPKLGAI ILKCGEKKSA SAVKTKQEKT HECSICKAEF SSGQALGGHM 180 RRHRGLTLNA NANSTTRTEI SSSHHQESIR EKNFIELDLN LPAPEDEPKF VFASKDQILL 240 FAAAASNSLI DCHH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00049282001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232522	0.0	AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130761.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A078F9Y9	0.0	A0A078F9Y9_BRANA; BnaA03g00910D protein
STRING	Bra005766.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	1e-128	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]